SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40201

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene40201
CGTCGTGACCTTGGCTGTCACTCATTTAAGGCCCTCCAAAAAAAAAGTGATATATCCTGAGCATAAACCCATGTCTGAGATAACAGCTGGTCTGCATCGAGGAATTTACCACCAAGGGAAACTTCGTGTCAATCGTTACAACCCATTTGAAGCCTATGTTGGTAGTGAAAGTATTGGTGACGAGATCATAATTTATGGACGTGATAATATGAATCGAGCTTCTGACGGAGATGTAGTTGTAGTGGAGCTCTTGCCTAGGGATCAATGGGATGAAGGAAAAACAATGAAAATTGTAGAAGATGAAGAAGATGAAGACGAGGAGGTCCACTTAGTTCTGAATCTCTCATCGTTGCCAATAATGGAAGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene40201 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2654	1/4
SustainPine v2.0	sp_v2.0_unigene68084	3/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exosome complex exonuclease DIS3/RRP44 [Arabidopsis thaliana] gb\|AAL09713.1\| At2g17510/MJB20.7 [Arabidopsis thaliana] gb\|AAL90959.1\| At2g17510/MJB20.7 [Arabidopsis thaliana] gb\|AAD32908.2\| putative mitotic control protein dis3 [Arabidopsis thaliana] gb\|AE	-	-	1.0e-36	73%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	80%
Blast2go	exosome complex exonuclease dis3 rrp44	-	-	1.4013e-44	85%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease II/R	IPR001900	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Nucleotide binding protein, PINc	IPR006596	-	-
Sma3	Ribonuclease B, N-terminal OB domain	IPR013223	-	-
Sma3		IPR018115	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SWC0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 607 aas, your sequence is shorter than subject: 124 - 937

Fln protein: VVTLAVTHLRPSKKKVIYPEHKPMSEITAGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRDNMNRASDGDVVVVELLPRDQWDEGKTMKIVEDEEDEDEEVHLVLNLSSLPIMEDE*

Protein Length: 125

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAAGGCCCTCCAAAAAAAAAGTGATATATCCTGAGCATAAACCCATGTCTGAGATAACAGCTGGTCTGCATCGAGGAATTTACCACCAAGGGAAACTTCGTGTCAATCGTTACAACCCATTTGAAGCCTATGTTGGTAGTGAAAGTATTGGTGACGAGATCATAATTTATGGACGTGATAATATGAATCGAGCTTCTGACGGAGATGTAGTTGTAGTGGAGCTCTTGCCTAGGGATCAATGGGATGAAGGAAAAACAATGAAAATTGTAGAAGATGAAGAAGATGAAGACGAGGAGGTCCACTTAGTTCTGAATCTCTCATCGTTGCCAATAATGGAAGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c37421___VTHLRPSKKKVIYPEHKPMSEITAGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRDNMNRASDGDVVVVELLPRDQWDEGKTMKIVXXXXXXXXEVHLV
D7SWC0________________VEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRGNMNRAFDGDVVAVELLPQDQWQEEKSLSIADEEDEEEEDVHLV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
259	66		33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain