SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40191

Length: 377 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene40191
GAAGTAGAAGTTGGTTGCTTTAAGCGTTGCTGAGGCTGAATACATTGCCGCTAGTTTGGCCTCCTGTGAAGTTGTCTGGTTGAGAAGCTCTTTAGTGAGATTTTTGGACATGTGCTAGATACTGCCGTGATCTTTTGTGACAACCAGAGTGGGATTCGTCTTTCTGAGAATCTTGTATTTCATGATTGCTCCAAGCATATTGATATCAGGTACCACTTTATCCGGGATATGGTACAATGGGGAGCAATAAGGCTCCATCATATTGGGATCGATGAGCAGGTTGCCGATATTCTTACGAAGCCCCTCGTGAAGGTCAAATTCTTAACCTTCCATGAATGACTTGGAGTCGTGGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene40191 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene65254	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0434200 protein (Fragment) n=2 Tax=Oryza sativa RepID=Q0D6W3_ORYSJ	-	-	1.0e-21	45%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	55%
Blast2go	copia partial	-	-	1.23664e-24	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 80 aas, putative chimeric sequence, your sequence is shorter than subject: 39 - 1328

Fln protein: K*KLVALSVAEAEYIAASLASCEVVWLRSSLVRFLDMC*

Protein Length: 40

Fln nts: GAAGTAGAAGTTGGTTGCTTTAAGCGTTGCTGAGGCTGAATACATTGCCGCTAGTTTGGCCTCCTGTGAAGTTGTCTGGTTGAGAAGCTCTTTAGTGAGATTTTTGGACATGTGCTAG___ATACTGCCGTGATCTTTTGTGACAACCAGAGTGGGATTCGTCTTTCTGAGAATCTTGTATTTCATGATTGCTCCAAGCATATTGATATCAGGTACCACTTTATCCGGGATATGGTACAATGGGGAGCAATAAGGCTCCATCATATTGGGATCGATGAGCAGGTTGCCGATATTCTTACGAAGCCCCTCGTGAAGGTCAAATTCTTAACCTTCCATGAATGACTTGGAGTCGTGGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c37402___KLVALSVAEAEYIAASLASCEVVWLRSSL
P10978________________KCVALSTTEAEYIAATETGKEMIWLKRFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain