SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40101

Length: 395 nt

UniGene Fasta

>uagpf_v2_unigene40101
CGTCGTGACCTTGGCTGTCACTCACCTTATTCAAGCTATCAACAGGGTGTACGCAAGGGAAGTTGATGATGAAGGTCTGTGCTCTCAGTTAATCCGACCTATGGGTTACCCTTGTACTGAATTCGTGGTGGGTACAGAGGATGGTTTCTTACTAGGAGTGCAGCGTATTCCTTATGGGATCCATGATAGCGGTATTGTAAAAGTTGGCTCAAGGCCTCCAGTGTTTTTACAACATGGACTATTTCAGGGCGGGGACACTTGGTTTCAGAATTCCAGAGAACAGTCTCTAGGATTCATATTAGCAGATTCTGGATTTGATGTTTGGGTTGGAAATGTACGTGGTACACGTTGGAGTCATGGTCATGTCTCTCTTTCAGAACATAGCAAGGCCTTCT

Ace file of the UniGene uagpf_v2_unigene40101

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29267	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	triacylglycerol lipase 1 [Arabidopsis thaliana] sp\|Q71DJ5.1\|LIP1_ARATH RecName: Full=Triacylglycerol lipase 1; Flags: Precursor gb\|AAN77143.1\| putative triacylglycerol/steryl ester hydrolase [Arabidopsis thaliana] gb\|ABF58965.1\| At2g15230 [Arabidopsis tha	-	-	59%
FL-Next	sp=Triacylglycerol lipase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactolipase.	EC:3.1.1.26	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	73%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	73%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		73%
Blast2go	Metabolic pathways	01100		73%
Blast2go	Lipoyl synthase.	EC:2.8.1.8	-	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lipoic acid metabolism	00785		0.0	73%
Blast2go	Metabolic pathways	01100		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	lipoate biosynthetic process	GO:0009107	Biological Process	73%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	73%
Blast2go	circadian regulation of gene expression	GO:0032922	Biological Process	73%
Blast2go	galactolipase activity	GO:0047714	Molecular Function	73%
Blast2go	phospholipase activity	GO:0004620	Molecular Function	73%
Blast2go	GTPase activity	GO:0003924	Molecular Function	73%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	73%
Blast2go	lipoate synthase activity	GO:0016992	Molecular Function	73%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Partial AB-hydrolase lipase domain	IPR006693	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q71DJ5

Fln msg: Distance to subject end: 261 aas, atg_distance in limit (1-15): atg_distance = 7, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 98 - 393

Fln protein: MGYPCTEFVVGTEDGFLLGVQRIPYGIHDSGIVKVGSRPPVFLQHGLFQGGDTWFQNSREQSLGFILADSGFDVWVGNVRGTRWSHGHVSLSEHSKAF

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCTTATTCAAGCTATCAACAGGGTGTACGCAAGGGAAGTTGATGATGAAGGTCTGTGCTCTCAGTTAATCCGACCTATGGGTTACCCTTGTACTGAATTCGTGGTGGGTACAGAGGATGGTTTCTTACTAGGAGTGCAGCGTATTCCTTATGGGATCCATGATAGCGGTATTGTAAAAGTTGGCTCAAGGCCTCCAGTGTTTTTACAACATGGACTATTTCAGGGCGGGGACACTTGGTTTCAGAATTCCAGAGAACAGTCTCTAGGATTCATATTAGCAGATTCTGGATTTGATGTTTGGGTTGGAAATGTACGTGGTACACGTTGGAGTCATGGTCATGTCTCTCTTTCAGAACATAGCAAGGCCTTCT

Fln Alignment:

uagpf_mira_c37222___LCSQLIRPMGYPCTEFVVGTEDGFLLGVQRIPYGIHDSGIVKVGSRPPVFLQHGLFQGGDTWFQNSREQSLGFILADSGFDVWVGNVRGTRWSHGHVSLSEHSKAF
Q71DJ5________________LCADLIHPANYSCTEHSIQTKDGYILALQRVA-----SLGPRLQSGPPVLLQHGLFMAGDVWFLNSPKESLGFILADHGFDVWVGNVRGTRYSYGHVTLSDTDKEF

SNPs (tot: 3)

Position	C %	G %	T %	Probability
102	33		66	0.997464
105	33	66		0.997467
108		33	66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain