SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40004

Length: 228 nt

UniGene Fasta

>uagpf_v2_unigene40004
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCATTTCTTTGAGGCTTACAAAAATTATCTGCAAGTGGATATTGTAGCTGCTGACCAAGATGATTTACGTCTATGGAAGGGTTGGGTTGAGTCCCGATTAAGGCAACTCACATTGAAGATAGAGCGAGACACTTTTGGGATGCTGCAATGTCACCCTTATCCTACTGAATATGTTGACAATTCTAAGCATTG

Ace file of the UniGene uagpf_v2_unigene40004

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4261	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative poly(A) polymerase [Oryza sativa Japonica Group]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	nuclear poly polymerase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polynucleotide adenylyltransferase.	EC:2.7.7.19	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	81%
Blast2go	RNA binding	GO:0003723	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ25

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 75 - 701

Fln protein: VVTLAVVTLAVTHFFEAYKNYLQVDIVAADQDDLRLWKGWVESRLRQLTLKIERDTFGMLQCHPYPTEYVDNSKH

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCATTTCTTTGAGGCTTACAAAAATTATCTGCAAGTGGATATTGTAGCTGCTGACCAAGATGATTTACGTCTATGGAAGGGTTGGGTTGAGTCCCGATTAAGGCAACTCACATTGAAGATAGAGCGAGACACTTTTGGGATGCTGCAATGTCACCCTTATCCTACTGAATATGTTGACAATTCTAAGCATTG

Fln Alignment:

uagpf_mira_rep_c37048___FFEAYKNYLQVDIVAADQDDLRLWKGWVESRLRQLTLKIERDTFGMLQCHPYPTEYVDNSK
C0PQ25________________FFEAYKNYLQVDIVAADQDDLRLWKGWVESRLRQLTLKIERDTFGMLQCHPYPTEYVDNSK

SNPs (tot: 4)

Position	C %	G %	T %	Probability
16	66		33	0.997476
21	33	66		0.997476
23	33	66		0.997476
32		66	33	0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain