SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39982

Length: 243 nt

UniGene Fasta

>uagpf_v2_unigene39982
CGTCGTGACCTTGGCTGTCACTCATAGGCCTACAGAGGATGTTGCTTTTGCAGTAGCCCGATTTTACCAGAGAGGAGGAACACTTCAGAACTATTACATGTACCATGGAGGCACAAACTTTGGCCGGACAGCTGGAGGTCCATTCATTGCCACCAGTTATGACTATGATGCACCAATTGACGAATATGGGAATATAAGGCAGCCGAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAA

Ace file of the UniGene uagpf_v2_unigene39982

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28618	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI	-	-	57%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	beta-galactosidase 8	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Distance to subject end: 517 aas, your sequence is shorter than subject: 80 - 861

Fln protein: VVTLAVTHRPTEDVAFAVARFYQRGGTLQNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAI

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGGCCTACAGAGGATGTTGCTTTTGCAGTAGCCCGATTTTACCAGAGAGGAGGAACACTTCAGAACTATTACATGTACCATGGAGGCACAAACTTTGGCCGGACAGCTGGAGGTCCATTCATTGCCACCAGTTATGACTATGATGCACCAATTGACGAATATGGGAATATAAGGCAGCCGAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAA

Fln Alignment:

uagpf_mira_rep_c37007___RPTEDVAFAVARFYQRGGTLQNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAI
A9NUR2________________RPTEDLAFSVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain