SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39874

Length: 349 nt

UniGene Fasta

>uagpf_v2_unigene39874
CGTCGTGACCTTGGCTGTCACTCATTTTGCCTTCTCATGCGACATTGTACATGGCACCAGTTACACATCCTGAAAGATACAGTGAAAGTATTGACTTCTGGCGAAATGTTTATGGAATTGATATGTCTGCGATGTTACCATTGGCAAAGCAATGTGCCTTTGAGGAGCCTTGCATTGAAACAATTACAGCAGAAAATGTCTTGACATGGGCAATTGTTATCAAACAAATTGATTGTAGCACTGTCACAATACAGGAGTTGGAATCAGTTACTGCAAATTTCAATGTCTTGTCTATGATGAAAGCATCCCTGCATGGTTTTGCATTATGGTTTGATGTTTCATTTGGAGG

Ace file of the UniGene uagpf_v2_unigene39874

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene281	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Protein arginine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RGH9_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	protein arginine n-methyltransferase 6	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	histone arginine methylation	GO:0034969	Biological Process	82%
Blast2go	histone-arginine N-methyltransferase activity	GO:0008469	Molecular Function	82%
Blast2go	cytoplasm	GO:0005737	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Methyltransferase type 12	IPR013217	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV48

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 77 aas, your sequence is shorter than subject: 115 - 379

Fln protein: S*PWLSLILPSHATLYMAPVTHPERYSESIDFWRNVYGIDMSAMLPLAKQCAFEEPCIETITAENVLTWAIVIKQIDCSTVTIQELESVTANFNVLSMMKASLHGFALWFDVSFG

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGCCTTCTCATGCGACATTGTACATGGCACCAGTTACACATCCTGAAAGATACAGTGAAAGTATTGACTTCTGGCGAAATGTTTATGGAATTGATATGTCTGCGATGTTACCATTGGCAAAGCAATGTGCCTTTGAGGAGCCTTGCATTGAAACAATTACAGCAGAAAATGTCTTGACATGGGCAATTGTTATCAAACAAATTGATTGTAGCACTGTCACAATACAGGAGTTGGAATCAGTTACTGCAAATTTCAATGTCTTGTCTATGATGAAAGCATCCCTGCATGGTTTTGCATTATGGTTTGATGTTTCATTTGGAGG

Fln Alignment:

uagpf_mira_c36798___WL---SLILPSHATLYMAPVTHPERYSESIDFWRNVYGIDMSAMLPLAKQCAFEEPCIETITAENVLTWAIVIKQIDCSTVTIQELESVTANFNVLSMMKASLHGFALWFDVSF
A9NV48________________WLIPGGIVLPDKASLYLTAIEDADYKAEKIDFWENVYGFDMTCI----KKQAMLEPLVDTVDRNQIVTNCQSLKTMDISKMKPGD-ASFTASFKLVAERNDYIHALVAYFDVAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain