SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39791

Length: 321 nt

UniGene Fasta

>uagpf_v2_unigene39791
CGTCGTGACCTTGGCTGTCACTCATCGTTGACATTAAATTGGGTCACATTTTGCATTGAATCAAGCAATAAAGCTACTGTCTTAAAGATTCATAAAGATTATGTTCCAATTTGCATGGAGTGTCTAAATGATGGCACACCAGAAGTAAGAGATGCTGCATTTTCATCGTTGGCAGCTATTGCTAAGTTAGTTGGTATGAAACCTCTTGAGAGATCCTTGGAGAAACTTGATGATATTAGAAGGAAAAACTCAATGAAATGATTGGGACCACTGGCAATTCTCAGACACCTAGTGCAACATCAGGTACATTACGATTATCAC

Ace file of the UniGene uagpf_v2_unigene39791

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67605	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	microtubule bundling polypeptide TMBP200 [Nicotiana tabacum]	-	-	4.0e-29	83%
FL-Next	sp=Protein MOR1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	86%
Blast2go	microtubule organization protein	-	-	7.27969e-38	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	7.27969e-38	93%
Blast2go	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	7.27969e-38	93%
Blast2go	microtubule binding	GO:0008017	Molecular Function	7.27969e-38	93%
Blast2go	microtubule	GO:0005874	Cellular Component	7.27969e-38	93%
Blast2go	preprophase band	GO:0009574	Cellular Component	7.27969e-38	93%
Blast2go	spindle	GO:0005819	Cellular Component	7.27969e-38	93%
Blast2go	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	7.27969e-38	93%
Blast2go	phragmoplast	GO:0009524	Cellular Component	7.27969e-38	93%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5N749

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1477 aas, your sequence is shorter than subject: 87 - 1997

Fln protein: RRDLGCHSSLTLNWVTFCIESSNKATVLKIHKDYVPICMECLNDGTPEVRDAAFSSLAAIAKLVGMKPLERSLEKLDDIRRKNSMK*

Protein Length: 88

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTTGACATTAAATTGGGTCACATTTTGCATTGAATCAAGCAATAAAGCTACTGTCTTAAAGATTCATAAAGATTATGTTCCAATTTGCATGGAGTGTCTAAATGATGGCACACCAGAAGTAAGAGATGCTGCATTTTCATCGTTGGCAGCTATTGCTAAGTTAGTTGGTATGAAACCTCTTGAGAGATCCTTGGAGAAACTTGATGATATTAGAAGGAAAAACTCAATGAAATGATTGGGACCACTGGCAATTCTCAGACACCTAGTGCAACATCAGGTACATTACGATTATCAC

Fln Alignment:

uagpf_mira_rep_c36642___SLTLNWVTFCIESSNKATVLKIHKDYVPICMECLNDGTPEVRDAAFSSLAAIAKLVGMKPLERSLEKLDDIRRK
Q5N749________________SLTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPLERSLEKLDDVRKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain