SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39728

Length: 357 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene39728
AATTTGGCACGGAACACGATGATGTGTGCAGAGGATGCGTACTTAGGAAGTATGTTAAGTCAGCATTTCCAAGAAGTGACAGCAAAGTTGATGATGTGTTAGGACTCATACATTCAGATATTTGCGACTTGATTTCCACTAGAGCTCTCAACAGTGCTGAATATTTCGTCACCTTTATTGATGACCATTCCAAGAAAACTTGGATCTACTTCTTGAAGACCAAGGATGACGTCTTCGATCGTTTCAGAGAGTTTAAAGTTCTCGTGGGAAAGAGACAAGGAAGAAGATCAAGGTGCTTCGCTTAGATAATGGTGGAGAATATATTGATAAAGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene39728 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene76009	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH	-	-	6.0e-23	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	copia-type polyprotein	-	-	9.74692e-25	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Overlapping hits, possible frame ERROR between 284 and 269, Unexpected STOP codon at 3' end. Distance to subject end: 187 aas, your sequence is shorter than subject: 113 - 407

Fln protein: FGTEHDDVCRGCVLRKYVKSAFPRSDSKVDDVLGLIHSDICDLISTRALNSAEYFVTFIDDHSKKTWIYFLKTKDDVFDRFREFKVLVxxxxxxxIKVLRLDNGGEYIDKDE*

Protein Length: 114

Fln nts: AATTTGGCACGGAACACGATGATGTGTGCAGAGGATGCGTACTTAGGAAGTATGTTAAGTCAGCATTTCCAAGAAGTGACAGCAAAGTTGATGATGTGTTAGGACTCATACATTCAGATATTTGCGACTTGATTTCCACTAGAGCTCTCAACAGTGCTGAATATTTCGTCACCTTTATTGATGACCATTCCAAGAAAACTTGGATCTACTTCTTGAAGACCAAGGATGACGTCTTCGATCGTTTCAGAGAGTTTAAAGTTCTCGTGxxxxxxxxxxxxxxxxxxxxxATCAAGGTGCTTCGCTTAGATAATGGTGGAGAATATATTGATAAAGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c36524___TEHDDVCRGCVLRKYVKSAFPRSDS-KVDDVLGLIHSDICDLISTRALNSAEYFVTFIDDHSKKTWIYFLKTKDDVFDRFREFKVLVGxxxxxKIKVLRLDNGGEYIDKD
B8LKX7________________SQSQGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVExxxxxSIKILRTDNGKEYVNKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain