SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39711

Length: 214 nt

UniGene Fasta

>uagpf_v2_unigene39711
CGTCGTGACCTTGGCTGTCACTCATTGGGTAGGAAGTTCAGTGGATCGGAAAAGTACCTTTGGGTATTGTTTCAACATTGGATCAGGAATGACCTCCTGGTGTAGTAGGAAACAGAAATTTGTGGCTCTGAGCTCAGCTGAGGCAGAAACATGGCTGCAAGCACAGCTTCGTGTGAGGCCATATGGCTTAGAAAATCGCTTGTGAACCTATTCA

Ace file of the UniGene uagpf_v2_unigene39711

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene71149	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3Y5_SOLDE	-	-	9.0e-09	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	40%
Blast2go	glutamate receptor -like	-	-	6.04108e-09	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BIG7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 88 aas, your sequence is shorter than subject: 68 - 195

Fln protein: VVTLAVTHWVGSSVDRKSTFGYCFNIGSGMTSWCSRKQKFVALSSAEAETWLQAQLRVRPYGLENRL*

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGGTAGGAAGTTCAGTGGATCGGAAAAGTACCTTTGGGTATTGTTTCAACATTGGATCAGGAATGACCTCCTGGTGTAGTAGGAAACAGAAATTTGTGGCTCTGAGCTCAGCTGAGGCAGAAACATGGCTGCAAGCACAGCTTCGTGTGAGGCCATATGGCTTAGAAAATCGCTTGTGAACCTATTCA

Fln Alignment:

uagpf_mira_rep_c36494___VVTLAVTHWVGSSVDRKSTFGYCFNIGSGMTSWCSRKQKFVALSSAEAETWLQAQLRVRPYGLENRL
A5BIG7________________IIGFSDSDWAGNTIDRRSTTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain