SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39701

Length: 312 nt

UniGene Fasta

>uagpf_v2_unigene39701
CGTCGTGACCTTGGCTGTCACTCATGTGCCGATCCAGATTCTGAGAAAAGACCTAGGATGGGACATGTGGTGCGCATGCTTGAAGCAGATGAGTTTCCTTTCCGTGAGGATCGAAGAAGCAGAGCCAACTATGCCAGAAACAAAGGACTTGACGGTCAAGGTGGGGTAGCCCAGAAAATTATAACAGAAGGTTCAGCTTCTCGAGATGTGGAATCACAAAGCAGACATATACTGGAGCAGGCAAATACTAGGGAGAGCAAAAGGGGCAGGGGATTTGAACGCTGATCTCATGCACGATTCTGTTATTGATTT

Ace file of the UniGene uagpf_v2_unigene39701

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3017	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Musa acuminata]	-	-	64%
FL-Next	sp=Probable serine/threonine-protein kinase At1g01540; Arabidopsis thaliana (Mouse-ear cress).	-	-	35%
Blast2go	probable receptor-like protein kinase at2g42960-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q3EDL4

Fln msg: your sequence is shorter than subject: 95 - 472

Fln protein: RRDLGCHSCADPDSEKRPRMGHVVRMLEADEFPFREDRRSRANYARNKGLDGQGGVAQKIITEGSASRDVESQSRHILEQANTRESKRGRGFER*

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGCCGATCCAGATTCTGAGAAAAGACCTAGGATGGGACATGTGGTGCGCATGCTTGAAGCAGATGAGTTTCCTTTCCGTGAGGATCGAAGAAGCAGAGCCAACTATGCCAGAAACAAAGGACTTGACGGTCAAGGTGGGGTAGCCCAGAAAATTATAACAGAAGGTTCAGCTTCTCGAGATGTGGAATCACAAAGCAGACATATACTGGAGCAGGCAAATACTAGGGAGAGCAAAAGGGGCAGGGGATTTGAACGCTGA___TCTCATGCACGATTCTGTTATTGATTT

Fln Alignment:

uagpf_mira_rep_c36464___CADPDSEKRPRMGHVVRMLEADEFPFREDRRSRANYARNKGLDGQGGVAQKIITEGSASRDVESQSRH
Q3EDL4________________CVDPDANKRPKMGHIIHMLEAEDLLYRDERRTTRDHGSRE--------RQETAVVAAGSESGESGSRH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
24	66		33		0.997458
33			66	33	0.997458

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain