SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39663

Length: 240 nt

UniGene Fasta

>uagpf_v2_unigene39663
CGTCGTGACCTTGGCTGTCACTCATTCTCGGCAGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGGATAACACCAACATCCTGACAATAATTGATGTTGACGGTAGTTTGGCTAGTCCTCGCCTTCGTTTCAGCGAAGATGGTTCCCTATTGGCAGTCACAATGAATGACAATGGCATAAAGATCTTACCCAACGCAGAGGGATTCTACTTAATTGGCATGCTGGAGAGTAGATCC

Ace file of the UniGene uagpf_v2_unigene39663

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene82369	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ	-	-	2.0e-26	66%
FL-Next	Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1	-	-	0.0	56%
Blast2go	ramosa 1 enhancer locus 2	-	-	1.38002e-28	77%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV90-1

Fln msg: Distance to subject end: 436 aas, your sequence is shorter than subject: 80 - 1119

Fln protein: RRDLGCHSFSAAGDEFQIKFWDMDNTNILTIIDVDGSLASPRLRFSEDGSLLAVTMNDNGIKILPNAEGFYLIGMLESRS

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCGGCAGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGGATAACACCAACATCCTGACAATAATTGATGTTGACGGTAGTTTGGCTAGTCCTCGCCTTCGTTTCAGCGAAGATGGTTCCCTATTGGCAGTCACAATGAATGACAATGGCATAAAGATCTTACCCAACGCAGAGGGATTCTACTTAATTGGCATGCTGGAGAGTAGATCC

Fln Alignment:

uagpf_mira_rep_c36386___FSAAGDEFQIKFWDMDNTNILTIIDVDGSL-ASPRLRFSEDGSLLAVTMNDNGIKILPNAEGFYLIGMLESRS
Q0WV90-1______________YLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain