SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39596

Length: 406 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene39596
TACATCAAACAGTGTAGGAACAACTTGAGAAAAGTAAAAGAAGCTATAAGGCAAGGCATGACAAACACCGAGTTGATCATAAATTTCAAGTTGGTGATGAAGTTTGGTTATATATTAGAAAGAGAGACTTCACGAGGAAAGTAAAAATATTAAGCAAATTTGTTATGGTCCTTTTAAAATTCTGGAAAGGATTGGTAACAATGCATTTAAACTTGATTTGCCTCCTTACATGCAAATATACTATGTTGTTAATGTTGAGAATTTGAGATCGTTTGAGCCTCCTTTGATTGATGATCAAGGAGAGCATGTTTAGCTACCATCAACAGATTATTTCTCGCCATAATATCTAGATGAGCTTCAGCAAGATCTCATACTTGACAAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene39596 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene66891	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF	-	-	6.0e-14	63%
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	46%
Blast2go	retrotransposon ty3-gypsy subclass	-	-	9.30048e-16	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2AA76

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 34 aas, your sequence is shorter than subject: 114 - 887

Fln protein: TSNSVGTT*EK*KKL*GKA*QTPS*S*ISSW**SLVIY*KERLHEESKNIKQICYGPFKILERIGNNAFKLDLPPYMQIYYVVNVENLRSFEPPLIDDQGEHV*LPSTDYFSP*

Protein Length: 115

Fln nts: TACATCAAACAGTGTAGGAACAACTTGAGAAAAGTAAAAGAAGCTATAAGGCAAGGCATGACAAACACCGAGTTGATCATAAATTTCAAGTTGGTGATGAAGTTTGGTTATATATTAGAAAGAGAGACTTCACGAGGAAAGTAAAAATATTAAGCAAATTTGTTATGGTCCTTTTAAAATTCTGGAAAGGATTGGTAACAATGCATTTAAACTTGATTTGCCTCCTTACATGCAAATATACTATGTTGTTAATGTTGAGAATTTGAGATCGTTTGAGCCTCCTTTGATTGATGATCAAGGAGAGCATGTTTAGCTACCATCAACAGATTATTTCTCGCCATAATATCTAGATGAGCTTCAGCAAGATCTCATACTTGACAAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c36276___KERLHEESKNIKQICYGPFKILERIGNNAFKLDLPPYMQIYYVVNVENLRSFEPPLIDDQG-EHV*LPSTDYFSP*YLDELQQDLILDK
Q2AA76________________KERLKGEGKKLKPIYYGSFRILDQMGDNVFRLDLPHYLGMYSVINAEYLKLFEPPLLDDEGDDKVILPHVEDLWFDREEPLNEDCILER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain