SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39561

Length: 144 nt

UniGene Fasta

>uagpf_v2_unigene39561
CGTCGTGACCTTGGCTGTCACTCATTCTTTTGAAACTGACTGATTACTCTGTAAACAATACTAACAGGGAGACCCCACCTCTCTTGTTGTCGAGAGTGATGGACAACTGGCTACATATGGCATCAATGCTGTCTGCACTCCCCA

Ace file of the UniGene uagpf_v2_unigene39561

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25286	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome b6-f complex iron-sulfur subunit n=2 Tax=Picea sitchensis RepID=A9NLM7_PICSI	-	-	76%
FL-Next	sp=Cytochrome b6-f complex iron-sulfur subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	rieske fe-s precursor protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b6-f complex Fe-S subunit	IPR014909	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-
Sma3	Rieske iron-sulphur protein	IPR014349	-	-
Sma3		IPR005806	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0V6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 68 aas, your sequence is shorter than subject: 47 - 234

Fln protein: VVTLAVTHSFETD*LLCKQY*QGDPTSLVVESDGQLATYGINAVCTP

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTTGAAACTGACTGATTACTCTGTAAACAATACTAACAGGGAGACCCCACCTCTCTTGTTGTCGAGAGTGATGGACAACTGGCTACATATGGCATCAATGCTGTCTGCACTCCCCA

Fln Alignment:

uagpf_mira_c36189___QGDPTSLVVESDGQLATYGINAVCT
A9P0V6________________KGDPTYLVVENDGQLATYGINAVCT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain