SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39480

Length: 338 nt

UniGene Fasta

>uagpf_v2_unigene39480
CGTCGTGACCTTGGCTGTCACTCATATGTTCTGTTCAAAAAGCCTGGCCTACTTCTATCCACAGTCAGGGCTCTGGATGGGCTTGGTCTTGATGTTAAGCAAGCAGTCATAAGCTGCCTCAATGGATTTGCACTAGATGTCTTCGAAGCAGAGAAATCCAAGAGGGAAGATGTTACAGGCGAGGAGATCAAGGCATTGCTGCTGCAGACTGCAGGCTATCAAGCTGGACTGTAGTGGAAATAACTTACTACACGTCTTCAACTGTCCCTTCAGCTGAAAGCATAATATTCTTTCAGTCAGGTTTCAGTTCAGAATCCATGGAATTCCCATGGTGGTAT

Ace file of the UniGene uagpf_v2_unigene39480

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene77072	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor SCREAM2 n=2 Tax=Arabidopsis RepID=SCRM2_ARATH	-	-	6.0e-19	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	inducer of cbf expression	-	-	3.25179e-37	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to freezing	GO:0050826	Biological Process	3.25179e-37	83%
Blast2go	guard mother cell differentiation	GO:0010444	Biological Process	3.25179e-37	83%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	3.25179e-37	83%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A934

Fln msg: your sequence is shorter than subject: 78 - 175

Fln protein: RRDLGCHSYVLFKKPGLLLSTVRALDGLGLDVKQAVISCLNGFALDVFEAEKSKREDVTGEEIKALLLQTAGYQAGL*

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATGTTCTGTTCAAAAAGCCTGGCCTACTTCTATCCACAGTCAGGGCTCTGGATGGGCTTGGTCTTGATGTTAAGCAAGCAGTCATAAGCTGCCTCAATGGATTTGCACTAGATGTCTTCGAAGCAGAGAAATCCAAGAGGGAAGATGTTACAGGCGAGGAGATCAAGGCATTGCTGCTGCAGACTGCAGGCTATCAAGCTGGACTGTAG___TGGAAATAACTTACTACACGTCTTCAACTGTCCCTTCAGCTGAAAGCATAATATTCTTTCAGTCAGGTTTCAGTTCAGAATCCATGGAATTCCCATGGTGGTAT

Fln Alignment:

uagpf_mira_rep_c36038___KKPGLLLSTVRALDGLGLDVKQAVISCLNGFALDVFEAEKSKREDVTGEEIKALLLQTAGYQAGL
D5A934________________KKPGLLLSTMRALDELGLDVKQAIISCLNGFALDVFRAEQSMGGDVTAEEIKALLLHTADNEDGL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
81		33	66		0.997464
82	66	33			0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain