SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39395

Length: 231 nt

UniGene Fasta

>uagpf_v2_unigene39395
CGTCGTGACCTTGGCTGTCACTCAAATTTTGTTGGGCAGGCATCAACGTCCCCGGGCATCTCCGGGCAGACAATACAAGAGAGCATGAGGCTTTTGCTCCTCGTGAGGGCTTATCAGGTGAATGGCCACATGAAGGCGAAGCTGGATCCTCTAGGGTTGGAGGAGAGGGAGATTCCGTTGGATTTGGATCCAGGGCTGTATGGATTCACAGAGGCGGATCTGGACCGGGTA

Ace file of the UniGene uagpf_v2_unigene39395

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28237	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	oxoglutarate dehydrogenase - like protein [Arabidopsis thaliana]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	95%
Blast2go	2-oxoglutarate e1 component	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	90%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	90%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Dehydrogenase, E1 component	IPR001017	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	2-oxoglutarate dehydrogenase, E1 component	IPR011603	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HN88

Fln msg: Distance to subject end: 766 aas, your sequence is shorter than subject: 77 - 936

Fln protein: RRDLGCHSNFVGQASTSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPLDLDPGLYGFTEADLDRV

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTGTTGGGCAGGCATCAACGTCCCCGGGCATCTCCGGGCAGACAATACAAGAGAGCATGAGGCTTTTGCTCCTCGTGAGGGCTTATCAGGTGAATGGCCACATGAAGGCGAAGCTGGATCCTCTAGGGTTGGAGGAGAGGGAGATTCCGTTGGATTTGGATCCAGGGCTGTATGGATTCACAGAGGCGGATCTGGACCGGGTA

Fln Alignment:

uagpf_mira_rep_c35872___NFVGQASTSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPLDLDPGLYGFTEADLDR
F6HN88________________NFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFTEADLDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain