SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39341

Length: 390 nt

UniGene Fasta

>uagpf_v2_unigene39341
CGTCGTGACCTTGGCTGTCACTCAACATTCAGTTTCTGACCCTAATGCACTGCACCCAATAGAAAATATTCTGGTTGGTTTTGTTCGTGAAGAAAATGGAGATCCGGGCAAACAGATTACAGGGTGTATTTATCTTGTCTCAGCAGTGACTATTTTATCCGCTGCCTTGATTCTGCAGGCTGAGACAGTGAAGAGTATCCAGCCCCATTATCCCAAACATCGATTACTGCCATTCTAGGGTCCATTCAAACTGCTGTCCTAATAACGGTTCTGGACAGAGGAATGAAGCCAACATCATGGGTACTAGATAGGAGCGGGATCTTCACTTTTGTCTTTGCAGGAATCAGCTGTAATGGACTCGGACTTGCATTGCAATTGTGGTGTATGCAG

Ace file of the UniGene uagpf_v2_unigene39341

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18023	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] dbj\|BAB09073.1\| nodulin-like protein [Arabidopsis thaliana] gb\|AED95523.1\| Nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	auxin-induced protein 5ng4-like	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	58%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	58%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	58%
Blast2go	plasma membrane	GO:0005886	Cellular Component	58%
Blast2go	positive regulation of tryptophan metabolic process	GO:0090358	Biological Process	58%
Blast2go	positive regulation of auxin metabolic process	GO:0090355	Biological Process	58%

Source	InterPros	Term	Type	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADE6

Fln msg: Distance to subject end: 123 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 69 - 220

Fln protein: DSEEYPAPLSQTSITAILGSIQTAVLITVLDRGMKPTSWVLDRSGIFTFVFAGISCNGLGLALQLWCMQ

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATTCAGTTTCTGACCCTAATGCACTGCACCCAATAGAAAATATTCTGGTTGGTTTTGTTCGTGAAGAAAATGGAGATCCGGGCAAACAGATTACAGGGTGTATTTATCTTGTCTCAGCAGTGACTATTTTATCCGCTGCCTTGATTCTGCAGGCTGAGACAGTGAAGAGTATCCAGCCCCATTATCCCAAACATCGATTACTGCCATTCTAGGGTCCATTCAAACTGCTGTCCTAATAACGGTTCTGGACAGAGGAATGAAGCCAACATCATGGGTACTAGATAGGAGCGGGATCTTCACTTTTGTCTTTGCAGGAATCAGCTGTAATGGACTCGGACTTGCATTGCAATTGTGGTGTATGCAG

Fln Alignment:

uagpf_mira_rep_c35736___EEYPAPLSQTSITAILGSIQTAVLITVLDRGMKPTSWVLDRSG-IFTFVFAGISCNGLGLALQLWCM
D5ADE6________________KKYPARLSVTSFTCLFGIMQFLAIAAFFERD--PSHWKMRSGGEVFTVLYAGIVASGIAFSVQIWCI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain