SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39031

Length: 293 nt

UniGene Fasta

>uagpf_v2_unigene39031
CGTCGTGACCTTGGCTGTCACTCAATTCTTCATGGGTTCCAGATTAGTATCTTGGTTCAGCAAGAAACAGAGTTCGATTGCTTTATCTACAGCTGAAGCAGAGTATGTGGCTGCGGCATCTTGTTGCAACAACTTCTTTGGATGATGCAGACCTTGCAGGATTTTCATATCACTTGTACTCCTCCTGTCTCCATCTTATGTGATAACACAAGTGCTATCAGCATCTCAAAGAATCCGGTTATGCATTCAAAAACCAAGCACATACCAATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene39031

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene65376	2/4
SustainPine v2.0	sp_v2.0_unigene78057	2/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q10NE5_ORYSJ	-	-	1.0e-26	67%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	53%
Blast2go	retrotransposon unclassified	-	-	1.03321e-32	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P10978

Fln msg: Separated hits, possible frame ERROR between 115 and 193, Unexpected STOP codon at 3' end. Distance to subject end: 42 aas, your sequence is shorter than subject: 92 - 1328

Fln protein: VVTLAVTQFFMGSRLVSWFSKKQSSIALSTAEAEYVAxxxxxxxxxxxxxxxxxxxxxxxxxxxILCDNTSAISISKNPVMHSKTKHIPIE*

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTCATGGGTTCCAGATTAGTATCTTGGTTCAGCAAGAAACAGAGTTCGATTGCTTTATCTACAGCTGAAGCAGAGTATGTGGCTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCATCTTATGTGATAACACAAGTGCTATCAGCATCTCAAAGAATCCGGTTATGCATTCAAAAACCAAGCACATACCAATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c35057___FFMGSRLVSWFSKKQSSIALSTAEAEYVAAxxxxxxxxxxxxxxxxxxxxxxxxxxILCDNTSAISISKNPVMHSKTKHIPI
P10978________________FTFSGGAISWQSKLQKCVALSTTEAEYIAAxxxxxxxxxxxxxxxxxxxxxxxxxxVYCDSQSAIDLSKNSMYHARTKHIDV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
169			50	50	1.0
181	50			50	1.0
184			50	50	1.0
188	50		50		1.0
190	50	50			1.0
235		50		50	1.0
238	50		50		1.0
241		50		50	1.0
271		50		50	1.0
272	33		66		0.997455
276	33		66		0.997453
277	66	33			0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain