SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38987

Length: 315 nt

UniGene Fasta

>uagpf_v2_unigene38987
CGTCGTGACCTTGGCTGTCACTCAGCTCTGCGTGAGATAGGGACATACAAGGAAGTGCTTCGGTCCCAGGTGGAGCATATGTTAAATGACAGGTTGATGGAGTTTGTGACTGTTGATCTGCACGTCGTGACCTTGGCTGTCACTCATTTGACAAAGCTACTGTTCATTATGATCAGGTACGTGAAAAATTTATGTCATTGAGAAAAAGTACAAGGATGGATATTGTTTCAGAAACAGAAGAGGAATTGCGCAATGCAAGATCAGCATTTGAGCAAGCCCGCTTCAATCTAGTAACTGCTCTTTCAAATATTGAGG

Ace file of the UniGene uagpf_v2_unigene38987

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19899	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=ADP-ribosylation factor GTPase-activating protein AGD3; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	adp-ribosylation factor gtpase-activating protein agd3	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	89%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	89%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	89%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	89%
Blast2go	ARF GTPase activator activity	GO:0008060	Molecular Function	89%
Blast2go	trans-Golgi network transport vesicle	GO:0030140	Cellular Component	89%
Blast2go	cytosol	GO:0005829	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	BAR domain	IPR004148	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5W7F2

Fln msg: Separated hits, possible frame ERROR between 129 and 147, Distance to subject end: 647 aas, your sequence is shorter than subject: 105 - 827

Fln protein: RRDLGCHSALREIGTYKEVLRSQVEHMLNDRLMEFVTVDLHVxxxxxxxFDKATVHYDQVREKFMSLRKSTRMDIVSETEEELRNARSAFEQARFNLVTALSNIE

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTCTGCGTGAGATAGGGACATACAAGGAAGTGCTTCGGTCCCAGGTGGAGCATATGTTAAATGACAGGTTGATGGAGTTTGTGACTGTTGATCTGCACGTCGTxxxxxxxxxxxxxxxxxxATTTGACAAAGCTACTGTTCATTATGATCAGGTACGTGAAAAATTTATGTCATTGAGAAAAAGTACAAGGATGGATATTGTTTCAGAAACAGAAGAGGAATTGCGCAATGCAAGATCAGCATTTGAGCAAGCCCGCTTCAATCTAGTAACTGCTCTTTCAAATATTGAGG

Fln Alignment:

uagpf_mira_rep_c34969___ALREIGTYKEVLRSQVEHMLNDRLMEFVTVDLHVVxxxxxxFDKATVHYDQVREKFMSLRKSTRMDIVSETEEELRNARSAFEQARFNLVTALSNIE
Q5W7F2________________ALREIGTYKEVLRSQVEHILNDRLLQFANMDLHEVxxxxxxFDKASLTYDQAREKFLSLRKGTKSDVAAALEQELHTSRSMFEQARFNLVTALSNVE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
123		66	33		0.997471
125	33			66	0.997471
126		66		33	0.997471
131	33	66			0.997471
132		66	33		0.997471
133			33	66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain