SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38976

Length: 306 nt

UniGene Fasta

>uagpf_v2_unigene38976
CGTCGTGACCTTGGCTGTCACTCAAATTTGATCATATTACACCCCCAAATCTCATTGAGCAATACGAAGCAATTTTGTCTGCAAGACCAGAGATAGATAGTTTTGTGAAGATCTACCCTGCAGTTTCTCATGGCTGGGCAATAAGATACGACAATGACAATGAAATTGCCGTGAAAAATGCGGAGTTGGCTCACGATAAAATGTTGGAATGGTTTGGTACATACTTGAAGTAATAGGAAATTGTGCTATATCCTGAATAAGCAAATTGTATGTACTATTTCTCATATTATTTGTGGACTAGCTCCA

Ace file of the UniGene uagpf_v2_unigene38976

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2223	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative dienelactone hydrolase family protein n=1 Tax=Salvia miltiorrhiza RepID=A6ZI65_SALMI	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	endo- -beta-d-glucanase	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	72%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	72%
Blast2go	cytoplasm	GO:0005737	Cellular Component	72%
Blast2go	apoplast	GO:0048046	Cellular Component	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Dienelactone hydrolase	IPR002925	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTV6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 77 - 250

Fln protein: S*PWLSLKFDHITPPNLIEQYEAILSARPEIDSFVKIYPAVSHGWAIRYDNDNEIAVKNAELAHDKMLEWFGTYLK*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTGATCATATTACACCCCCAAATCTCATTGAGCAATACGAAGCAATTTTGTCTGCAAGACCAGAGATAGATAGTTTTGTGAAGATCTACCCTGCAGTTTCTCATGGCTGGGCAATAAGATACGACAATGACAATGAAATTGCCGTGAAAAATGCGGAGTTGGCTCACGATAAAATGTTGGAATGGTTTGGTACATACTTGAAGTAA___TAGGAAATTGTGCTATATCCTGAATAAGCAAATTGTATGTACTATTTCTCATATTATTTGTGGACTAGCTCCA

Fln Alignment:

uagpf_mira_rep_c34942___LSLKFDHITPPNLIEQYEAILSARPEIDSFVKIYPAVSHGWAIRYDNDNEIAVKNAELAHDKMLEWFGTYLK
A9NTV6________________LGAEFDHITPPEFIEKYEAILSARPEVDSFVKIYPAVAHGWAVRYNNDNEVAMKNAELAHGKMLEWFSTYLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain