SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38839

Length: 277 nt

UniGene Fasta

>uagpf_v2_unigene38839
CGTCGTGACCTTGGCTGTCACTCAGTTCATTTTTGCTAGATGATGATTCCAGCATTCCCTTCACGGTGGATGATATATCAAAATCTGTGCAAGACATGAATCTTTCAGATGTCGATCCTCCTCCTCTTCTTCGTCAGAATTCAGATTTCCATTTTTTGTTGCCACGTGCCGAATAATGCTGCGATGACAGTCCCTTTCACCGCCTCTAATATTGATATCTCAACTTATTTTTTTAATTGAGAAAGAGTGTCTATATTGCCAAGAGTGCTTACCCTAA

Ace file of the UniGene uagpf_v2_unigene38839

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene64350	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	myosin motor domain-containing protein and DIL domain-containing protein [Arabidopsis thaliana] gb\|AEE28340.1\| myosin motor domain-containing protein and DIL domain-containing protein [Arabidopsis thaliana]	-	-	1.0e-10	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	70%
Blast2go	myosin-h heavy chain-like	-	-	2.92935e-12	88%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Involucrin repeat	IPR000354	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	HAMP linker domain	IPR003660	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7U8K4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 58 - 99

Fln protein: S*PWLSLSSFLLDDDSSIPFTVDDISKSVQDMNLSDVDPPPLLRQNSDFHFLLPRAE*

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCATTTTTGCTAGATGATGATTCCAGCATTCCCTTCACGGTGGATGATATATCAAAATCTGTGCAAGACATGAATCTTTCAGATGTCGATCCTCCTCCTCTTCTTCGTCAGAATTCAGATTTCCATTTTTTGTTGCCACGTGCCGAATAA___TGCTGCGATGACAGTCCCTTTCACCGCCTCTAATATTGATATCTCAACTTATTTTTTTAATTGAGAAAGAGTGTCTATATTGCCAAGAGTGCTTACCCTAA

Fln Alignment:

uagpf_mira_rep_c34674___IPFTVDDISKSVQDMNLSDVDPPPLLRQNSDFHFLLPRAE
D7U8K4________________IPFTVDDISKTMQQIKVFDIDPPPLIRENSGFSFLLPRAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain