SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38711

Length: 359 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene38711
CCTCAAGCACTTACCATTTGGAGCCATGGAGCAGATTGGTGTGAGTGAAGAATCTTTACAAGCTGCAGGTTGAGACAAACGTATCGTTAAGAAACAAGGCACGGCACGAGCATGAAAAAGAGAAAGGGCAGCTTTGGCACAAACACATGGGGCATTTACCTCATGGTGCACTCAAAATCCTTCTGCAGATAGCCATGGGTCTACCGTCGTGCAGTATTGACCAGCATGAAGTGTGCAAGGGTTGCACACTTGGCAAGTGTGCCAAGTCATATTTCTGGGCTAAGACAGCAAATCCAAAGGGACTTTGGAGCTGGTACATTCAGATATATGTGGGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene38711 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene66054	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SHL9_ARATH	-	-	0.0001	37%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	35%
Blast2go	hypothetical protein VITISV_021425 [Vitis vinifera]	-	-	5.56733e-07	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5ALT7

Fln msg: Separated hits, possible frame ERROR between 275 and 290, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 71 aas, your sequence is shorter than subject: 119 - 338

Fln protein: SSTYHLEPWSRLV*VKNLYKLQVETNVSLRNKARHEHEKEKGQLWHKHMGHLPHGALKILLQIAMGLPSCSIDQHEVCKGCTLGKCAKSYxxxxxxKSKGTLELVHSDICGMSDSQGHD

Protein Length: 120

Fln nts: CCTCAAGCACTTACCATTTGGAGCCATGGAGCAGATTGGTGTGAGTGAAGAATCTTTACAAGCTGCAGGTTGAGACAAACGTATCGTTAAGAAACAAGGCACGGCACGAGCATGAAAAAGAGAAAGGGCAGCTTTGGCACAAACACATGGGGCATTTACCTCATGGTGCACTCAAAATCCTTCTGCAGATAGCCATGGGTCTACCGTCGTGCAGTATTGACCAGCATGAAGTGTGCAAGGGTTGCACACTTGGCAAGTGTGCCAAGTCATATTTxxxxxxxxxxxxxxxCAAATCCAAAGGGACTTTGGAGCTGGTACATTCAGATATATGTGGGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c34392___KLQVETNVSL-------RNKARHEHEKEKGQLWHKHMGHLPHGALKILLQ--IAMGLPSCSIDQHEVCKGCTLGKCAKSYFxxxxxKSKGTLELVHSDICG-MS-DSQGHD
A5ALT7________________KIKMEKNRSFPIVFKYAENVALRMEDVEEAWLWHRRFGHLNFNSLKMLYQRKMVQGLPNTIEEKNEVCDGCALGKHHRQSFxxxxxRAKKVLELIHTDICGPMSIPSQGNN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain