SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38674

Length: 422 nt

UniGene Fasta

>uagpf_v2_unigene38674
CGTCGTGACCTTGGCTGTCACTCATGTTATATTTACCCGAATCTCCCCGCTGGTTATACAGACAGAACAAGATTGATGAAGCAGTGGCCATTCTTGAAAGGCTCTATCCAAAGGAAGATGTGGGGGCTGAGGTTACAGCTCTAAGGGATTCCATTGCCGCAGAAGATGATACAAATACAACGTGGACTAAAATTCGCACATTGATAAAAATCACCTGAACTTCGACCAGCTGTGGTGGCAGGCGTTGGGCTTTCGGTCCTTCAACAGTTTGTAGGGATAAACACTGTAATGTATTACAGTCCCACAATTGTTCAACTGGCGGGCTTCGCGTCGAACACAACAGCTCTGCTCCTATCGCTGATAACATCAGGACTGAATGCAGTGGGATCCTTATTGGGAATGTACCTNATTGACAGAACAGG

Ace file of the UniGene uagpf_v2_unigene38674

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6482	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative inositol transporter 2 [Arabidopsis thaliana] sp\|Q9C757.1\|INT2_ARATH RecName: Full=Probable inositol transporter 2 gb\|AAG50560.1\|AC073506_2 hypothetical protein [Arabidopsis thaliana] gb\|AAL67029.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	probable inositol transporter 2-like	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	myo-inositol transport	GO:0015798	Biological Process	70%
Blast2go	signaling	GO:0023052	Biological Process	70%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	70%
Blast2go	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%
Blast2go	pollen tube	GO:0090406	Biological Process	70%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Plexin/semaphorin/integrin	IPR003659	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLI2

Fln msg: Separated hits, possible frame ERROR between 164 and 217, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 252 aas, your sequence is shorter than subject: 140 - 589

Fln protein: S*PWLSLMLYLPESPRWLYRQNKIDEAVAILERLYPKEDVGAEVTALRDSIAAxxxxxxxxxxxxxxxxxxxELRPAVVAGVGLSVLQQFVGINTVMYYSPTIVQLAGFASNTTALLLSLITSGLNAVGSLLGMYLIDRT

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTATATTTACCCGAATCTCCCCGCTGGTTATACAGACAGAACAAGATTGATGAAGCAGTGGCCATTCTTGAAAGGCTCTATCCAAAGGAAGATGTGGGGGCTGAGGTTACAGCTCTAAGGGATTCCATTGCCGCAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGAACTTCGACCAGCTGTGGTGGCAGGCGTTGGGCTTTCGGTCCTTCAACAGTTTGTAGGGATAAACACTGTAATGTATTACAGTCCCACAATTGTTCAACTGGCGGGCTTCGCGTCGAACACAACAGCTCTGCTCCTATCGCTGATAACATCAGGACTGAATGCAGTGGGATCCTTATTGGGAATGTACCTaATTGACAGAACAGG

Fln Alignment:

uagpf_mira_c34301___LMLYLPESPRWLYRQNKIDEAVAILERLYPKEDVGAEVTALRDSIAAExxxxxxxxxxxxxxxxxxELRPAVVAGVGLSVLQQFVGINTVMYYSPTIVQLAGFASNTTALLLSLITSGLNAVGSLLGMYLIDR
B8LLI2________________LMLTLPESPRWLYRKKGEAEAVAVLKRIYSPDEVEEEIQSLKESVETExxxxxxxxxxxxxxxxxxEIRYALFVGVGLQVFQQFVGINTVMYYSPTIVQLAGYASNQTALLLSLITSGLNATGSIASIYLIDK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
28		33		66	0.997458
29	66		33		0.997458
31	66	33			0.997458
32			33	66	0.997459
34			33	66	0.997459
48	33	66			0.997476
75		40		60	1.0
77	60			40	1.0
78		40		60	1.0
80	60			40	1.0
81	60		40		1.0
82	40		60		1.0
84	60	40			1.0
85			60	40	1.0
90		60		40	1.0
91	60		40		1.0
93		40		60	1.0
94	40	60			1.0
95		40		60	1.0
97		40	60		1.0
244		80		20	0.995495

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain