SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38669

Length: 356 nt

UniGene Fasta

>uagpf_v2_unigene38669
CGTCGTGACCTTGGCTGTCACTCAGATTCTGGCAGAGAATGCCGGGTGAAATTGGAAGAATTTACGAGGGAGACTGAGATGATGTCGAAGGATATGGTGGATGAGCTTTTATGTGGGAGGATGACAACACCGCCACTCACACCGAGTGGAATCGACATGAGCTTCTCCAATTTCCTCTGCCCTGGACAACTTTTGGTCAACTGAGGTTGTCCATTCTTTGGTGTATATTCTTTCTCTACCATTTATAATTATTTCAATTTTTTAAAATCCCTGCTGTTGATCTTGATCTCGATCTCGATCTCCTCCATGGTATGGATTCCATGCTCCACATAAGTATTTCGTTTCAGTACTCTACT

Ace file of the UniGene uagpf_v2_unigene38669

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7540	3/4
SustainPine v2.0	sp_v2.0_unigene78174	1/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor AP2-EREBP n=1 Tax=Lotus japonicus RepID=B3IX32_LOTJA	-	-	7.0e-35	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	ethylene-responsive transcription factor 1a	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	0.0	63%
Blast2go	response to chitin	GO:0010200	Biological Process	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQI3

Fln msg: your sequence is shorter than subject: 68 - 350

Fln protein: RRDLGCHSDSGRECRVKLEEFTRETEMMSKDMVDELLCGRMTTPPLTPSGIDMSFSNFLCPGQLLVN*

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTCTGGCAGAGAATGCCGGGTGAAATTGGAAGAATTTACGAGGGAGACTGAGATGATGTCGAAGGATATGGTGGATGAGCTTTTATGTGGGAGGATGACAACACCGCCACTCACACCGAGTGGAATCGACATGAGCTTCTCCAATTTCCTCTGCCCTGGACAACTTTTGGTCAACTGA___GGTTGTCCATTCTTTGGTGTATATTCTTTCTCTACCATTTATAATTATTTCAATTTTTTAAAATCCCTGCTGTTGATCTTGATCTCGATCTCGATCTCCTCCATGGTATGGATTCCATGCTCCACATAAGTATTTCGTTTCAGTACTCTACT

Fln Alignment:

uagpf_mira_rep_c34296___RECRVKLEEFTRETEMMSKDMVDELLCGRMTTPPLTPSGIDMSFSNFLCPGQLLVN
C0PQI3________________RQCRVRFED----SNTMDHEMVEELLGGKLATPPLTPSGIDMSFTGFLSAGQLMVN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
120	50		50		1.0
163	50			50	1.0
167	50	50			1.0
193	50			50	1.0
228		50		50	1.0
229	50			50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
285	302	GATCTC GATCTC GATCTC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
120	50		50		1.0
163	50			50	1.0
167	50	50			1.0
193	50			50	1.0
228		50		50	1.0
229	50			50	1.0

Position	A %	C %	G %	T %	Probability
120	50		50		1.0
163	50			50	1.0
167	50	50			1.0
193	50			50	1.0
228		50		50	1.0
229	50			50	1.0

Position	A %	C %	G %	T %	Probability
120	50		50		1.0
163	50			50	1.0
167	50	50			1.0
193	50			50	1.0
228		50		50	1.0
229	50			50	1.0