SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38486

Length: 218 nt

UniGene Fasta

>uagpf_v2_unigene38486
CGTCGTGACCTTGGCTGTCACTCATCCTTCGCTAAACTTTTATCTTGCGTCGAAGAAAGGGAACAGCTGCAAAGTGTCGTCGAGACGGCAAACTGCAATTGGATCGACCATGGCACCTCCGCAGGATCCAATTGCGAATGTGCAGACATCATCAGAAGGTGAAGAACGTGCCATTTCCAGCGTTCTAATGTTCATAGCCATGCAGGCAGAAGCCCTTC

Ace file of the UniGene uagpf_v2_unigene38486

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13258	2/4
SustainPine v2.0	sp_v2.0_unigene59782	2/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[F] COG0775 Nucleoside phosphorylase	-	-	2.0e-11	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	protein	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylthioadenosine nucleosidase.	EC:3.2.2.16	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	81%
Blast2go	ethylene biosynthetic process	GO:0009693	Biological Process	81%
Blast2go	response to deep water	GO:0030912	Biological Process	81%
Blast2go	L-methionine biosynthetic process from S-adenosylmethionine	GO:0019284	Biological Process	81%
Blast2go	methylthioadenosine nucleosidase activity	GO:0008930	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside phosphorylase domain	IPR000845	-	0.0	-
Sma3	Nucleoside phosphorylase	IPR018017	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPY3

Fln msg: Distance to subject end: 227 aas, your sequence is shorter than subject: 36 - 263

Fln protein: MAPPQDPIANVQTSSEGEERAISSVLMFIAMQAEAL

Protein Length: 37

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTTCGCTAAACTTTTATCTTGCGTCGAAGAAAGGGAACAGCTGCAAAGTGTCGTCGAGACGGCAAACTGCAATTGGATCGACC_-_ATGGCACCTCCGCAGGATCCAATTGCGAATGTGCAGACATCATCAGAAGGTGAAGAACGTGCCATTTCCAGCGTTCTAATGTTCATAGCCATGCAGGCAGAAGCCCTTC

Fln Alignment:

uagpf_mira_rep_c33892___MAPPQDPIANVQTSSEGEERAISSVLMFIAMQAEAL
A9NPY3________________MAPPQDPIANVQTSSEGEERAISSVLIIIAMQAEAL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
24	66		33		0.997457
27		66	33		0.997457
29			33	66	0.997457
30	33	66			0.997453
31		33	66		0.997453
39			33	66	0.997476
84	75			25	0.996481
89		25	75		0.996481
90		66		33	0.997452
91	66			33	0.997452
92	66		33		0.997452
93	66		33		0.997452
100	66	33			0.997452
103	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain