SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38436

Length: 269 nt

UniGene Fasta

>uagpf_v2_unigene38436
CGTCGTGACCTTGGCTGTCACTCAAAATGTGTGGGGAGCCTTACTTGGGGCCTGCAGAATTCACAGCAATATTGAGCTTGCAGAAGAAGCAGCAAAACACCTCTTTGAATTAGAACCAAACCATGCTGGATATTATGTATTGTTGTCAAACATCTATGCTGAGGCACACAGGTGGAGGATGTAGTTAAGTTGAGGACAATGATGAAAGAGAGGGGAGTGAAGAAGCCACCAGGATGCAGTATTGTTGTGGTAAATAGTGAGGTTCATGC

Ace file of the UniGene uagpf_v2_unigene38436

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene77830	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tetratricopeptide-like helical [Medicago truncatula]	-	-	3.0e-17	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	pentatricopeptide repeat-containing protein chloroplastic-like	-	-	1.42055e-26	84%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 175 and 175, Distance to subject end: 121 aas, your sequence is shorter than subject: 89 - 795

Fln protein: VVTLAVTQNVWGALLGACRIHSNIELAEEAAKHLFELEPNHAGYYVLLSNIYAEAHRxxDVVKLRTMMKERGVKKPPGCSIVVVNSEVH

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATGTGTGGGGAGCCTTACTTGGGGCCTGCAGAATTCACAGCAATATTGAGCTTGCAGAAGAAGCAGCAAAACACCTCTTTGAATTAGAACCAAACCATGCTGGATATTATGTATTGTTGTCAAACATCTATGCTGAGGCACACAGGxxxxxxGATGTAGTTAAGTTGAGGACAATGATGAAAGAGAGGGGAGTGAAGAAGCCACCAGGATGCAGTATTGTTGTGGTAAATAGTGAGGTTCATGC

Fln Alignment:

uagpf_mira_rep_c33796___VTLAVTQNVWGALLGACRIHSNIELAEEAAKHLFELEPNHAGYYVLLSNIYAEAHRWEDVVKLRTMMKERGVKKPPGCSIVVVNSEV
B8LQA8________________MSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain