SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38400

Length: 358 nt

UniGene Fasta

>uagpf_v2_unigene38400
CGTCGTGACCTTGGCTGTCACTCAGGATTTTGAGAAGGCAGCCGGATTCGAAAGTGGACTTTAATAATTAGGTGTTTTCTTGGGTAGCAGTCATGAGTGAAGCAACGAATGTAGGTCATAGAGAGACAGCAGGAACAAATGACAGGGTTTTAACATTGGTTCGATTTCATCTTCATGACTGGGTCATTCTCTTTGGTCTTCTTATCCTGGACATGGTGCTTGCTAAGATACATCCATTTGATCGTTTTGTTGGAGAATTCTCACTAGATAATATTCGCTATCCACTCAAGGGAAATACAGTTCCTTTCTGGTTGTGCCAATTATTTCAATTATCTTTCCACTTATTTTCATTGTTTCA

Ace file of the UniGene uagpf_v2_unigene38400

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19274	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphatidic acid phosphatase beta n=3 Tax=Phaseoleae RepID=Q9FVL1_VIGUN	-	-	2.0e-27	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	lipid phosphate phosphatase 3	-	-	5.61749e-33	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphatidate phosphatase.	EC:3.1.3.4	-	5.61749e-33	75%

Source	KEGGs	Term	e value	Identity
Blast2go	Glycerolipid metabolism	00561	5.61749e-33	75%
Blast2go	Glycerophospholipid metabolism	00564	5.61749e-33	75%
Blast2go	Ether lipid metabolism	00565	5.61749e-33	75%
Blast2go	Sphingolipid metabolism	00600	5.61749e-33	75%
Blast2go	Metabolic pathways	01100	5.61749e-33	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	5.61749e-33	75%
Blast2go	phosphatidate phosphatase activity	GO:0008195	Molecular Function	5.61749e-33	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.61749e-33	75%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidic acid phosphatase type 2/haloperoxidase	IPR000326	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Phosphatidic acid phosphatase/chloroperoxidase, N-terminal	IPR016118	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR3

Fln msg: Distance to subject end: 250 aas, your sequence is shorter than subject: 88 - 338

Fln protein: MSEATNVGHRETAGTNDRVLTLVRFHLHDWVILFGLLILDMVLAKIHPFDRFVGEFSLDNIRYPLKGNTVPFWLCQLFQLSFHLFSLF

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTTTGAGAAGGCAGCCGGATTCGAAAGTGGACTTTAATAATTAGGTGTTTTCTTGGGTAGCAGTC_-_ATGAGTGAAGCAACGAATGTAGGTCATAGAGAGACAGCAGGAACAAATGACAGGGTTTTAACATTGGTTCGATTTCATCTTCATGACTGGGTCATTCTCTTTGGTCTTCTTATCCTGGACATGGTGCTTGCTAAGATACATCCATTTGATCGTTTTGTTGGAGAATTCTCACTAGATAATATTCGCTATCCACTCAAGGGAAATACAGTTCCTTTCTGGTTGTGCCAATTATTTCAATTATCTTTCCACTTATTTTCATTGTTTCA

Fln Alignment:

uagpf_mira_c33724___VGHRETAGTNDRVLTLVRFHLHDWVILFGLLILDMVLAKIHPFDRFVGEFSLDNIRYPLKGNTVPFW
A9NWR3________________LGDRWARTARSHGIQLVQYHKHDWLMILGLVVIEILLNVINPFYRFVGSGMMTDLMYPFKGNTVPFW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain