SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38316

Length: 163 nt

UniGene Fasta

>uagpf_v2_unigene38316
CGTCGTGACCTTGGCTGTCACTCAATAAGCAGAATCGATTGAGAGTTATATCAGATAAAGAGGAGGAGAAGAGATGGGATTGATCCCCAGACAGCATGAGGAGTTGAAGGTCAAGGAAGGAGAAGATGGGCTGCTTGTCCCTCCTCTGAATTTTGCAATGGTT

Ace file of the UniGene uagpf_v2_unigene38316

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20431	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative tyrosine-protein phosphatase [Arabidopsis thaliana] sp\|Q9ZVN4.1\|Y1500_ARATH RecName: Full=Probable tyrosine-protein phosphatase At1g05000 gb\|AAC97999.1\| ESTs gb\|H36249, gb\|AA59732 and gb\|AA651219 come from this gene [Arabidopsis thaliana] gb\|AAO6	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	tyrosine specific protein phosphatase family protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric monoester hydrolases.	EC:3.1.3.-	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	86%
Blast2go	Ascorbate and aldarate metabolism	00053	86%
Blast2go	Lipopolysaccharide biosynthesis	00540	86%
Blast2go	Ether lipid metabolism	00565	86%
Blast2go	Sphingolipid metabolism	00600	86%
Blast2go	Thiamine metabolism	00730	86%
Blast2go	Riboflavin metabolism	00740	86%
Blast2go	Nicotinate and nicotinamide metabolism	00760	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphatase activity	GO:0016791	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein-tyrosine phosphatase, SIW14-like	IPR004861	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABY5

Fln msg: Distance to subject end: 164 aas, your sequence is shorter than subject: 30 - 194

Fln protein: MGLIPRQHEELKVKEGEDGLLVPPLNFAMV

Protein Length: 31

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAGCAGAATCGATTGAGAGTTATATCAGATAAAGAGGAGGAGAAGAG_-_ATGGGATTGATCCCCAGACAGCATGAGGAGTTGAAGGTCAAGGAAGGAGAAGATGGGCTGCTTGTCCCTCCTCTGAATTTTGCAATGGTT

Fln Alignment:

uagpf_mira_rep_c33534___MGLIPRQHEELKVKEGEDGLLVPPLNFAMV
D5ABY5________________MGLIHRQHEELHVKEGEDGLFVPPLNYAMV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
21		80	20		0.995493
23		80		20	0.995493
24	80		20		0.995494
25			40	20	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain