SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38276

Length: 430 nt

UniGene Fasta

>uagpf_v2_unigene38276
CGTCGTGACCTTGGCTGTCACTCAAGGTATCTGCAAACGTCGTGACCTTGGCTGTCACTCAAGTTGACGGTCTTGTTGATTTTCTGAACGAGTCTTGGACGCAGTTCCATGCCACAGCTGAAGCAAAGCGGTTGTTACTAGAAGCTGGTTTTATACAATTAAGGGAACAAGATGAGTGGGATGTACAACCGGGTGGGCGCTACTTTTTTACTCGAAATATGTCTTGCATAATAGCTTTTGCTGTTGGAGAAAAGTATGTTGCAGGCAAGGGCTTTCATGTGATTGCAGCACATACAGATAGTCCCTGTCCAAAGCTAAAACCAGTATCAGCAACATCTAAGTTGGGATTTTTGACTGTGAATGTACAACCTTATGGAGCTGGTTTATGGCATACATGGTTTGATAGAGATTTGAGTGTGGCTGGACGAGT

Ace file of the UniGene uagpf_v2_unigene38276

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3592	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl aminopeptidase [Arabidopsis thaliana] emb\|CAB86013.1\| aspartyl aminopeptidase-like protein [Arabidopsis thaliana] dbj\|BAB08975.1\| aspartyl aminopeptidase [Arabidopsis thaliana] gb\|AED90774.1\| aspartyl aminopeptidase [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	aspartyl aminopeptidase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	82%
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	metallopeptidase activity	GO:0008237	Molecular Function	82%
Blast2go	vacuole	GO:0005773	Cellular Component	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN23

Fln msg: Distance to subject end: 367 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 140 - 502

Fln protein: PWLSLKVSANVVTLAVTQVDGLVDFLNESWTQFHATAEAKRLLLEAGFIQLREQDEWDVQPGGRYFFTRNMSCIIAFAVGEKYVAGKGFHVIAAHTDSPCPKLKPVSATSKLGFLTVNVQPYGAGLWHTWFDRDLSVAGR

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTATCTGCAAACGTCGTGACCTTGGCTGTCACTCAAGTTGACGGTCTTGTTGATTTTCTGAACGAGTCTTGGACGCAGTTCCATGCCACAGCTGAAGCAAAGCGGTTGTTACTAGAAGCTGGTTTTATACAATTAAGGGAACAAGATGAGTGGGATGTACAACCGGGTGGGCGCTACTTTTTTACTCGAAATATGTCTTGCATAATAGCTTTTGCTGTTGGAGAAAAGTATGTTGCAGGCAAGGGCTTTCATGTGATTGCAGCACATACAGATAGTCCCTGTCCAAAGCTAAAACCAGTATCAGCAACATCTAAGTTGGGATTTTTGACTGTGAATGTACAACCTTATGGAGCTGGTTTATGGCATACATGGTTTGATAGAGATTTGAGTGTGGCTGGACGAGT

Fln Alignment:

uagpf_mira_rep_c33439___VDFLNESWTQFHATAEAKRLLLEAGFIQLREQDEWDVQPGGRYFFTRNMSCIIAFAVGEKYVAGKGFHVIAAHTDSPCPKLKPVSATSKLGFLTVNVQPYGAGLWHTWFDRDLSVAGR
B8LN23________________IDFLNASPTAFHAVGEAKRQLKQAGYEQISEREDWTLEPGGKYFFTRNHSTIVAFAIGHKYTAGNGFGIVCAHTDSPCLKLKPSSKVTKGGFLEIGVQPYGGGLWHTWFDRDLTVAGR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
42		33	66		0.997476
43	33			66	0.997476
45	66		33		0.997471
46		66	33		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain