SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38089

Length: 410 nt

UniGene Fasta

>uagpf_v2_unigene38089
CGTCGTGACCTTGGCTGTCACTCAAATGGCAATAGCACTCTCTCTTTTCATGTGTGGGACAAGATTGTACCGACATAAACTGCCTGGTGATAGTCCGTTCACTGGAATCGTCGTGGTCTTTGTTGTCAGTATCCGTAAATGGAATGTCTCTGTTCCTTCTCTGGGAGAAAAGAAAATATATGTTATTCAAGAAGAACAGCTTTTAAAGGGTGAAAAGAGTAGAGAGCTTTTGCCTACAAATCAGCTAAGGTTTCTTGACAAGGCAACTGTGGCGGTTGATTTCGATTACAAGCATAAAGACATTAACTGGAGACTATGCACAGTTACACAGGTTGAAGAGGTGAAACTTGTTCTAAGATTGTTACCTATTTGGGTGGCTTGTTTGATGTATGGGGTTGTCTTTGCACAAT

Ace file of the UniGene uagpf_v2_unigene38089

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25755	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to oligopeptide transporter, putative n=1 Tax=Vitis vinifera RepID=UPI0001985618	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Distance to subject end: 230 aas, your sequence is shorter than subject: 136 - 604

Fln protein: VVTLAVTQMAIALSLFMCGTRLYRHKLPGDSPFTGIVVVFVVSIRKWNVSVPSLGEKKIYVIQEEQLLKGEKSRELLPTNQLRFLDKATVAVDFDYKHKDINWRLCTVTQVEEVKLVLRLLPIWVACLMYGVVFAQ

Protein Length: 137

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGGCAATAGCACTCTCTCTTTTCATGTGTGGGACAAGATTGTACCGACATAAACTGCCTGGTGATAGTCCGTTCACTGGAATCGTCGTGGTCTTTGTTGTCAGTATCCGTAAATGGAATGTCTCTGTTCCTTCTCTGGGAGAAAAGAAAATATATGTTATTCAAGAAGAACAGCTTTTAAAGGGTGAAAAGAGTAGAGAGCTTTTGCCTACAAATCAGCTAAGGTTTCTTGACAAGGCAACTGTGGCGGTTGATTTCGATTACAAGCATAAAGACATTAACTGGAGACTATGCACAGTTACACAGGTTGAAGAGGTGAAACTTGTTCTAAGATTGTTACCTATTTGGGTGGCTTGTTTGATGTATGGGGTTGTCTTTGCACAAT

Fln Alignment:

uagpf_mira_rep_c33012___MAIALSLFMCGTRLYRHKLPGDSPFTGIVVVFVVSIRKWNVSVPSLGEKKIYVIQEEQLLKGEKSRELLPTNQLRFLDKATVAVDFDYKHKDINWRLCTVTQVEEVKLVLRLLPIWVACLMYGVVFAQ
A9NWU3________________MAIALTVFLCGTRLYRHKLPGASPLTRIAQVFVATILKWNVPVPSQGEKNIYVIQEEQLLKGEKSRELLPKNQLRFLDKATVAVDLDYKHKDINWRLCTVTQVEEAKLVLRLLPIWVACLMYGVVFAQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
111		50		50	1.0
113		50	50		1.0
114	50			50	1.0
115	50		50		1.0
116	50		50		1.0
117		50		50	1.0
121			50	50	1.0
123		50		50	1.0
124	50			50	1.0
126		50		50	1.0
129		50	50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
111		50		50	1.0
113		50	50		1.0
114	50			50	1.0
115	50		50		1.0
116	50		50		1.0
117		50		50	1.0
121			50	50	1.0
123		50		50	1.0
124	50			50	1.0
126		50		50	1.0
129		50	50		1.0

Position	A %	C %	G %	T %	Probability
111		50		50	1.0
113		50	50		1.0
114	50			50	1.0
115	50		50		1.0
116	50		50		1.0
117		50		50	1.0
121			50	50	1.0
123		50		50	1.0
124	50			50	1.0
126		50		50	1.0
129		50	50		1.0

Position	A %	C %	G %	T %	Probability
111		50		50	1.0
113		50	50		1.0
114	50			50	1.0
115	50		50		1.0
116	50		50		1.0
117		50		50	1.0
121			50	50	1.0
123		50		50	1.0
124	50			50	1.0
126		50		50	1.0
129		50	50		1.0