SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38077

Length: 449 nt

UniGene Fasta

>uagpf_v2_unigene38077
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAAGACCTCTCTGAGAAGCCTAATCATAGCCCAGCAGCTCTATTGGCTGCAAAATTATGTGGACAAAGTTCAAAATATGCTCACGAAGGTGTGCATTTTTCACATAGAGTATTGGAAACCTGTGAATGTAAATTTGATCACATGAAAGGTGTTGCCAGTCATCTGCTTGGGGTTGCCCTAGGGAGGAAAGCTAGATCTGTTGATTCTGACTCTGAAAGAACCAAGATGCAACATGAGGCTCTTATTGCTTTGGAAGAAGCTGCAGTGTCAGAAAATAAAGATCCTGAGGTGATGTTTAGTCTTGCGTTGGAAAATGCTGAGCAACGTAATCTAAACATAGCACTGGACTGTGCAAAGAAGTATTTGGCTATGATGGCAGGGGCTTCATTAAAAGGTTGGAAGCTCTT

Ace file of the UniGene uagpf_v2_unigene38077

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene39562	1/4
SustainPine v2.0	sp_v2.0_unigene49461	2/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin-binding protein MPCBP n=2 Tax=Andropogoneae RepID=B6U2D5_MAIZE	-	-	3.00004e-41	44%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	47%
Blast2go	calmodulin-binding protein mpcbp	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	calmodulin binding	GO:0005516	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	SPOUT methyltransferase, predicted	IPR003742	-	-
Sma3	Tetratricopeptide TPR-4	IPR011717	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SEQ8

Fln msg: Distance to subject end: 238 aas, your sequence is shorter than subject: 149 - 704

Fln protein: RRDLGCHVVTLAVTQDLSEKPNHSPAALLAAKLCGQSSKYAHEGVHFSHRVLETCECKFDHMKGVASHLLGVALGRKARSVDSDSERTKMQHEALIALEEAAVSENKDPEVMFSLALENAEQRNLNIALDCAKKYLAMMAGASLKGWKL

Protein Length: 150

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAAGACCTCTCTGAGAAGCCTAATCATAGCCCAGCAGCTCTATTGGCTGCAAAATTATGTGGACAAAGTTCAAAATATGCTCACGAAGGTGTGCATTTTTCACATAGAGTATTGGAAACCTGTGAATGTAAATTTGATCACATGAAAGGTGTTGCCAGTCATCTGCTTGGGGTTGCCCTAGGGAGGAAAGCTAGATCTGTTGATTCTGACTCTGAAAGAACCAAGATGCAACATGAGGCTCTTATTGCTTTGGAAGAAGCTGCAGTGTCAGAAAATAAAGATCCTGAGGTGATGTTTAGTCTTGCGTTGGAAAATGCTGAGCAACGTAATCTAAACATAGCACTGGACTGTGCAAAGAAGTATTTGGCTATGATGGCAGGGGCTTCATTAAAAGGTTGGAAGCTCTT

Fln Alignment:

uagpf_mira_rep_c32981___EKPNHSPAALLAAKLCGQSSKYAHEGVHFSHRVLETCECKFDHMKGVASHLLGVALGRKARSVDSDSERTKMQHEALIALEEAAVSENKDPEVMFSLALENAEQRNLNIALDCAKKYLAMMAGASLKGWK
A9SEQ8________________ERPDDVAALLLAARICAARIDLAVEGVGYAQRALEHLSPELMYMKSRALHILGVSFGTQARFASSDSERGKLQHQALEALQEAAALESEDPRIVFDLGLEYAMQRQLSRALDCAKQFLDISSGAWVEGWR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
26	33			66	0.997476
27	33		66		0.997476
29		66		33	0.997471
40	33			66	0.997454
41	33	66			0.997454
185	75			25	0.996486
187	75		25		0.996486
191	75	25			0.996486
192	75	25			0.996486
193			75	25	0.996486
194			66	33	0.997452
195			33	66	0.997452
197		33		66	0.997452
200		66		33	0.997452
203		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain