SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37939

Length: 232 nt

UniGene Fasta

>uagpf_v2_unigene37939
CGTCGTGACCTTGGCTGTCACTCTTGGAGATGGGTTACCAGGTTCGTTTTGGAGTTCTTCAAGCGGGAAATTATGGTGTTTCACAATCACGTAAAAGGGCATTTATTTGGGCAGCTTCCCCACAGGAATCACTCCCTGAATGGCCGGAACCCATGCATGTCTTTGGAAGTTCGCAAATTAAGATATCATTGCCCGGAGGCTTTCAGTATGCTGCTGTTAGAGATGCTGCAGG

Ace file of the UniGene uagpf_v2_unigene37939

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14892	3/4
SustainPine v2.0	sp_v2.0_unigene29967	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	Cytosine-specific methyltransferase n=1 Tax=Daucus carota RepID=O48867_DAUCA	-	-	62%
FL-Next	sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	dna (cytosine-5)-methyltransferase 1b-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of DNA methylation	GO:0010216	Biological Process	71%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	71%
Blast2go	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	71%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	71%
Blast2go	zygote asymmetric cytokinesis in embryo sac	GO:0010069	Biological Process	71%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	71%

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	DNA (cytosine-5)-methyltransferase 1, eukaryote	IPR017198	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P34881

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 205 aas, your sequence is shorter than subject: 76 - 1534

Fln protein: S*PWLSLLEMGYQVRFGVLQAGNYGVSQSRKRAFIWAASPQESLPEWPEPMHVFGSSQIKISLPGGFQYAAVRDAA

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCTTGGAGATGGGTTACCAGGTTCGTTTTGGAGTTCTTCAAGCGGGAAATTATGGTGTTTCACAATCACGTAAAAGGGCATTTATTTGGGCAGCTTCCCCACAGGAATCACTCCCTGAATGGCCGGAACCCATGCATGTCTTTGGAAGTTCGCAAATTAAGATATCATTGCCCGGAGGCTTTCAGTATGCTGCTGTTAGAGATGCTGCAGG

Fln Alignment:

uagpf_mira_rep_c32682___SLLEMGYQVRFGVLQAGNYGVSQSRKRAFIWAASPQESLPEWPEPMHVFGSSQIKISLPGGFQYAAVRDAA
P34881________________SLLEMGYQVRFGILEAGAYGVSQSRKRAFIWAAAPEEVLPEWPEPMHVFGVPKLKISLSQGLHYAAVRSTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain