SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37930

Length: 381 nt

UniGene Fasta

>uagpf_v2_unigene37930
CGTCGTGACCTTGGCTGTCACTCATCGTTCGTGGTGAGTTTGGCTGTGACTTATTTTTGGTAACTGAATTTTTATTCAGGGTGTACCTGCACACACATCAGAATCTCCGAGATGATTTGCCTCATTGGAAGGTTCTCTTGTGTAGGATGTTTGAACACAGTCCTGTTGCTTGTCAGAGTTTTATTTATGCATTGGTGAAACAACCAAATTGGATATTTGATTACCTTTTAAAATGCCCCATTGATGAAATTCAACAGGTGTTTTCCACTCTCCTTGTACAGGCTTTGCAGTATGCTGTGAAATTTTGCCATCATCCGTCGTCTTCAGATTCTAGTGCCCCTACAATGGATGATTTCTGTGTAGACGATCTGATTGGTGTTT

Ace file of the UniGene uagpf_v2_unigene37930

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5962	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Selaginella moellendorffii RepID=D8SWI5_SELML	-	-	41%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase; Selaginella moellendorffii (Spikemoss).	-	-	48%
Blast2go	ubiquitin specific peptidase 9	-	-	46%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	46%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SWI5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 302 aas, your sequence is shorter than subject: 126 - 2442

Fln protein: S*PWLSLIVRGEFGCDLFLVTEFLFRVYLHTHQNLRDDLPHWKVLLCRMFEHSPVACQSFIYALVKQPNWIFDYLLKCPIDEIQQVFSTLLVQALQYAVKFCHHPSSSDSSAPTMDDFCVDDLIGV

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTTCGTGGTGAGTTTGGCTGTGACTTATTTTTGGTAACTGAATTTTTATTCAGGGTGTACCTGCACACACATCAGAATCTCCGAGATGATTTGCCTCATTGGAAGGTTCTCTTGTGTAGGATGTTTGAACACAGTCCTGTTGCTTGTCAGAGTTTTATTTATGCATTGGTGAAACAACCAAATTGGATATTTGATTACCTTTTAAAATGCCCCATTGATGAAATTCAACAGGTGTTTTCCACTCTCCTTGTACAGGCTTTGCAGTATGCTGTGAAATTTTGCCATCATCCGTCGTCTTCAGATTCTAGTGCCCCTACAATGGATGATTTCTGTGTAGACGATCTGATTGGTGTTT

Fln Alignment:

uagpf_mira_rep_c32665___LVTEFLFRVYLHTHQNLRDDLPHWKVLLCRMFEHSPVACQSFIYALVKQPNWIFDYLLKCPIDEIQQVFSTLLVQALQYAV
D8SWI5________________IALEFLFRVYLRTHGSLREDFHQWKVTIWKLLDHNIIACRCFLNTLVERPQWVQDFLLRCPVEEVRQAFAALLVHALKTAV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
30	50	50			1.0
31	50		50		1.0
32	50			50	1.0
33		50	50		1.0
34	50		50		1.0
38		50	50		1.0
39		50		50	1.0
45	50	50			1.0
46	50			50	1.0
50		50	50		1.0
52	50	50			1.0
55		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
30	50	50			1.0
31	50		50		1.0
32	50			50	1.0
33		50	50		1.0
34	50		50		1.0
38		50	50		1.0
39		50		50	1.0
45	50	50			1.0
46	50			50	1.0
50		50	50		1.0
52	50	50			1.0
55		50		50	1.0

Position	A %	C %	G %	T %	Probability
30	50	50			1.0
31	50		50		1.0
32	50			50	1.0
33		50	50		1.0
34	50		50		1.0
38		50	50		1.0
39		50		50	1.0
45	50	50			1.0
46	50			50	1.0
50		50	50		1.0
52	50	50			1.0
55		50		50	1.0

Position	A %	C %	G %	T %	Probability
30	50	50			1.0
31	50		50		1.0
32	50			50	1.0
33		50	50		1.0
34	50		50		1.0
38		50	50		1.0
39		50		50	1.0
45	50	50			1.0
46	50			50	1.0
50		50	50		1.0
52	50	50			1.0
55		50		50	1.0