SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37861

Length: 361 nt

UniGene Fasta

>uagpf_v2_unigene37861
CGTCGTGACCTTGGCTGTCACTCATCTTCTAAAAAACGCAAGAACTGTGGTGGGGTTGGCTGTCACTCAATGGAGGTCATGCCAGAGGTCTCTGGTATGGATCGTGTGGCTGCCAAACTGTATGTGATTTCCAAGGGCCCCATGAAATTTTCGGAAGCTCATGGGATTCAACAATGGTGGTCTTATGAGTCAGAGCTCCAGATGGCATTAAGTGGGAGTAAATTGATACAACAACAGCTTGGTTCCTTCATACAGGGTTCTCATCTGAAGACTGCCCTGGGATCTTAGCCCCAGTCATGAGTACAATTCTCAGGGCAGCACAATAGGCCCTACCTGAAAACCCCCAAATACATATTCTTTA

Ace file of the UniGene uagpf_v2_unigene37861

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene149	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	Lipase (Class 3)-like protein n=2 Tax=Oryza sativa RepID=Q943F9_ORYSJ	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	65%
Blast2go	gdsl esterase lipase at4g10955-like	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Major intrinsic protein	IPR000425	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6H5A3

Fln msg: your sequence is shorter than subject: 96 - 374

Fln protein: RRDLGCHSSSKKRKNCGGVGCHSMEVMPEVSGMDRVAAKLYVISKGPMKFSEAHGIQQWWSYESELQMALSGSKLIQQQLGSFIQGSHLKTALGS*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCTAAAAAACGCAAGAACTGTGGTGGGGTTGGCTGTCACTCAATGGAGGTCATGCCAGAGGTCTCTGGTATGGATCGTGTGGCTGCCAAACTGTATGTGATTTCCAAGGGCCCCATGAAATTTTCGGAAGCTCATGGGATTCAACAATGGTGGTCTTATGAGTCAGAGCTCCAGATGGCATTAAGTGGGAGTAAATTGATACAACAACAGCTTGGTTCCTTCATACAGGGTTCTCATCTGAAGACTGCCCTGGGATCTTAG___CCCCAGTCATGAGTACAATTCTCAGGGCAGCACAATAGGCCCTACCTGAAAACCCCCAAATACATATTCTTTA

Fln Alignment:

uagpf_mira_rep_c32506___VAAKLYVISKGPMKFSEAHGIQQWWSYESELQMALSGSKLIQQQLGS
F6H5A3________________MAAKLFVMSKGKQKFMEAHGLQQWWSEDLELQLALHNSKLINRQLKS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
46		50		50	1.0
49		50	50		1.0
50	50		50		1.0
53	50		50		1.0
54		50	50		1.0
55		50	50		1.0
56	50			50	1.0
59	50		50		1.0
60	50	50			1.0
61			50	50	1.0
62	50		50		1.0
63	50			50	1.0
64	50	50			1.0
66	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
46		50		50	1.0
49		50	50		1.0
50	50		50		1.0
53	50		50		1.0
54		50	50		1.0
55		50	50		1.0
56	50			50	1.0
59	50		50		1.0
60	50	50			1.0
61			50	50	1.0
62	50		50		1.0
63	50			50	1.0
64	50	50			1.0
66	50	50			1.0

Position	A %	C %	G %	T %	Probability
46		50		50	1.0
49		50	50		1.0
50	50		50		1.0
53	50		50		1.0
54		50	50		1.0
55		50	50		1.0
56	50			50	1.0
59	50		50		1.0
60	50	50			1.0
61			50	50	1.0
62	50		50		1.0
63	50			50	1.0
64	50	50			1.0
66	50	50			1.0

Position	A %	C %	G %	T %	Probability
46		50		50	1.0
49		50	50		1.0
50	50		50		1.0
53	50		50		1.0
54		50	50		1.0
55		50	50		1.0
56	50			50	1.0
59	50		50		1.0
60	50	50			1.0
61			50	50	1.0
62	50		50		1.0
63	50			50	1.0
64	50	50			1.0
66	50	50			1.0