SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37710

Length: 496 nt

UniGene Fasta

>uagpf_v2_unigene37710
CGTCGTGACCTTGGCTGTCACTCAAAGCTTTTTGGTTATACCACATTTTGGGTTATTGGTCAAGAACCTTTTGGGGATCTAGGTGAAGGAGTTCTGTTTCTTGGAAATTTAAGAGGCAACAGGGAAGAAGTTTTTTCGAAGCTTCAAAAACAATTGAGGGAAGTTGCCTTGGTACTAAATACAATCTTTTCATGGTAGAAGAGCCCAATTCAGAAGGTTCAGATCCTCGTGGTGGTCCTCGAGTTAGTTTTGGGTTGCTAAGAAAGGAAGTTTCGGAGCCAAGGCCTACAACTTTATGGCAGTATGTTATTGCTGTCATACTGTTTGTTCTTACTGCAGGATCATGTCTAGAGTTAGGGGTTGCTTCTCAGTTACCCAAGCTACCCCCAGAGGTTGTTCAATATTTCACAAATCCTGAAGCCACAGAGCCACCTGACTTGCAGCTGCTGGTTCCATATGTGGAGTCCGCATTACCACTTGCCTATGGTGTACTTGG

Ace file of the UniGene uagpf_v2_unigene37710

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6233	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase M50 family protein [Arabidopsis thaliana] gb\|AAK92744.1\| unknown protein [Arabidopsis thaliana] gb\|AAN71977.1\| unknown protein [Arabidopsis thaliana] gb\|AED93947.1\| Peptidase M50 family protein [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Sterol regulatory element-binding protein site 2 protease, putative; Ricinus communis (Castor bean).	-	-	78%
Blast2go	protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	86%
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	86%
Blast2go	proteolysis	GO:0006508	Biological Process	86%
Blast2go	chloroplast organization	GO:0009658	Biological Process	86%
Blast2go	negative gravitropism	GO:0009959	Biological Process	86%
Blast2go	photosystem II assembly	GO:0010207	Biological Process	86%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	86%
Blast2go	photosystem I assembly	GO:0048564	Biological Process	86%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DDT domain	IPR004022	-	-
Sma3	Peptidase M50	IPR008915	-	-
Sma3	DDT domain, subgroup	IPR018500	-	-
Sma3	DDT domain superfamily	IPR018501	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SI76

Fln msg: Separated hits, possible frame ERROR between 165 and 171, Distance to subject end: 242 aas, your sequence is shorter than subject: 165 - 562

Fln protein: RRDLGCHSKLFGYTTFWVIGQEPFGDLGEGVLFLGNLRGNREEVFSKLQKQLRExxxGTKYNLFMVEEPNSEGSDPRGGPRVSFGLLRKEVSEPRPTTLWQYVIAVILFVLTAGSCLELGVASQLPKLPPEVVQYFTNPEATEPPDLQLLVPYVESALPLAYGVL

Protein Length: 166

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGCTTTTTGGTTATACCACATTTTGGGTTATTGGTCAAGAACCTTTTGGGGATCTAGGTGAAGGAGTTCTGTTTCTTGGAAATTTAAGAGGCAACAGGGAAGAAGTTTTTTCGAAGCTTCAAAAACAATTGAGGGAAGTxxxxxxTGGTACTAAATACAATCTTTTCATGGTAGAAGAGCCCAATTCAGAAGGTTCAGATCCTCGTGGTGGTCCTCGAGTTAGTTTTGGGTTGCTAAGAAAGGAAGTTTCGGAGCCAAGGCCTACAACTTTATGGCAGTATGTTATTGCTGTCATACTGTTTGTTCTTACTGCAGGATCATGTCTAGAGTTAGGGGTTGCTTCTCAGTTACCCAAGCTACCCCCAGAGGTTGTTCAATATTTCACAAATCCTGAAGCCACAGAGCCACCTGACTTGCAGCTGCTGGTTCCATATGTGGAGTCCGCATTACCACTTGCCTATGGTGTACTTGG

Fln Alignment:

uagpf_mira_rep_c32128___KLFGYTTFWVIGQEPFGDLGEGVLFLGNLRGNREEVFSKLQKQLREVxxGTKYNLFMVEEPNSEGSDPRGGPRVSFGLLRKEVSEPRPTTLWQYVIAVILFVLTAGSCLELGVASQLPKLPPEVVQYFTNPEATEPPDLQLLVPYVESALPLAYGVL
B9SI76________________KLFGYSTFWVTKEEPFGDFGEGILFLGNLRGKREDVFSKLQNQLVEVxxGDKYNLFMVEEPNSDGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQINRLPPEVVKYFTDPNATDPPDMELLFPFVDSALPLAYGIL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
24	66		33		0.997459
25	66			33	0.997459
26	66	33			0.997461
29		66	33		0.997459
162		40	60		1.0
164	60			40	1.0
165	60	40			1.0
168			40	60	1.0
169	40		60		1.0
176		40		60	1.0
177	60			40	1.0
178		60	40		1.0
180	60	40			1.0
182	60	40			1.0
184	60	40			1.0
185	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain