SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37530

Length: 224 nt

UniGene Fasta

>uagpf_v2_unigene37530
CGTCGTGACCTTGGCTGTCACTCAAGGGTCATGGCAGAAAGATGCATCCACCACGAAACATCTTGCATTTGATGGATGGTTTATAAGCCTTTACAGTATAGTGCTTACAAGATCACATATAGTACTGCGTGATGCAGTGAAACAAGAGGTTCCATCTGCATGGGATCCTGCCGCATTAGCTGGATTTATTGAGAAGTATGGCACACATGTTATTGTTGGTGTCA

Ace file of the UniGene uagpf_v2_unigene37530

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4064	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Membrane attack complex component/perforin/complement C9 [Medicago truncatula]	-	-	61%
FL-Next	tr=mRNA, clone: RTFL01-47-G18; Thellungiella halophila (Salt cress).	-	-	66%
Blast2go	mac perforin domain-containing protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E4MYA4

Fln msg: Distance to subject end: 429 aas, your sequence is shorter than subject: 74 - 612

Fln protein: VVTLAVTQGSWQKDASTTKHLAFDGWFISLYSIVLTRSHIVLRDAVKQEVPSAWDPAALAGFIEKYGTHVIVGV

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGTCATGGCAGAAAGATGCATCCACCACGAAACATCTTGCATTTGATGGATGGTTTATAAGCCTTTACAGTATAGTGCTTACAAGATCACATATAGTACTGCGTGATGCAGTGAAACAAGAGGTTCCATCTGCATGGGATCCTGCCGCATTAGCTGGATTTATTGAGAAGTATGGCACACATGTTATTGTTGGTGTCA

Fln Alignment:

uagpf_mira_rep_c31682___TLAVTQGSWQKDASTTKHLAFDGWFISLYSIVLTRSHIVLRDAVKQEVPSAWDPAALAGFIEKYGTHVIVGV
E4MYA4________________TMFELREGWQKDASSVKTLAYDGWFISLYSVELVRSQVTLRDEVKREVPSSWDSVALAGFIEKYGTHIVVGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain