SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37496

Length: 300 nt

UniGene Fasta

>uagpf_v2_unigene37496
CGTCGTGACCTTGGCTGTCACTCATTGTTACAAGGATATAAGTTTTTGGATCAGTGAATCATTTACTGAAAACAATTTCTGTGAAGTTGTACGTGGTGTTGCGTCGTGACCTTGGCTGTCACTCAATCTTTGATTGATAATTTTACAAATAAGAAGGGAATGACCAGTCACTGTTACAGAATTACGTATCGTTCCATGGAGCGTTCTCTTACTGATGAAGAGGTTAACCAATTACAGGGTCGTGTCAGAGATGAAGTGGAAAACAAGTTGAATGTGACCATTAGATAATTGTTGGTTTTT

Ace file of the UniGene uagpf_v2_unigene37496

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1624	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	phenylalanyl-tRNA synthetase [Arabidopsis thaliana] sp\|Q94K73.1\|SYFM_ARATH RecName: Full=Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial; AltName: Full=Phenylalanine--tRNA ligase; Short=PheRS; Flags: Precursor gb\|AAK44062.1\|AF370247_1 putative p	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	phenylalanyl-trna chloroplastic mitochondrial-like	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:6.1.1.2-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	phenylalanyl-tRNA aminoacylation	GO:0006432	Biological Process	88%
Blast2go	tRNA processing	GO:0008033	Biological Process	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	phenylalanine-tRNA ligase activity	GO:0004826	Molecular Function	88%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	88%
Blast2go	tRNA binding	GO:0000049	Molecular Function	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	plastid	GO:0009536	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Phenylalanyl-tRNA synthetase	IPR002319	-	-
Sma3		IPR018157	-	-
Sma3	Phenylalanyl-tRNA synthetase, class IIc, mitochondrial	IPR004530	-	-
Sma3	Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding	IPR005121	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMM1

Fln msg: Separated hits, possible frame ERROR between 103 and 112, your sequence is shorter than subject: 96 - 460

Fln protein: VVTLAVTHCYKDISFWISESFTENNFCEVVRGVxxxxLAVTQSLIDNFTNKKGMTSHCYRITYRSMERSLTDEEVNQLQGRVRDEVENKLNVTIR*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTACAAGGATATAAGTTTTTGGATCAGTGAATCATTTACTGAAAACAATTTCTGTGAAGTTGTACGTGGTGTTGCxxxxxxxxxCTTGGCTGTCACTCAATCTTTGATTGATAATTTTACAAATAAGAAGGGAATGACCAGTCACTGTTACAGAATTACGTATCGTTCCATGGAGCGTTCTCTTACTGATGAAGAGGTTAACCAATTACAGGGTCGTGTCAGAGATGAAGTGGAAAACAAGTTGAATGTGACCATTAGATAATTGTTGGTTTTT

Fln Alignment:

uagpf_mira_c31596___CYKDISFWISESFTENNFCEVVRGVAxxxLAVTQSLIDNFTNKKGMTSHCYRITYRSMERSLTDEEVNQLQGRVRDEVENKLNVTIR
B8LMM1________________CYKDISFWISESFTENNFCEVVRGIAxxxLAEQVSLIDSFTNKKGMTSHCYRITYRSMERSLTDEEINQLQGRVRDEVENKLNVTIR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
110		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain