SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37430

Length: 441 nt

UniGene Fasta

>uagpf_v2_unigene37430
CGTCGTGACCTTGGCTGTCACTCAGATGATACCAAGGGGTGAGAACCTTGCACTGTTAGTTGATTTCGTCAGTGAGCTGTGGCTGAAAATCGTTGTTGATTCAATGTACCCTTTGGCAAAGGCAGAAGGTGCATGGGCAAAGATCATGGATGGACATGCTACCGGAAAGGTTATAGTAAACATTTAAAGAGTAGTCTGTACGTTACTGAAGTGTCATCGCTATTTCTGAGGTTTGACACTCAGTTCAAACTTCATATAGCTGTAGAACTTTGTAAACCTCATTTATAGCTTTAGAAGTCTTAATTATGTAATGCTCTATTCTTTTTTCGAATTTTAACTTCATTTGAAAGATATAGGGATTGGTACTTCCTCGAACCCTGCATATGAGTCTATTATTTTATGGTGTAAAAATGACTATTGCCGTAATGAGAACCAATTTTG

Ace file of the UniGene uagpf_v2_unigene37430

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2706	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative quinone-oxidoreductase-like protein [Arabidopsis thaliana] sp\|Q9SV68.1\|QORH_ARATH RecName: Full=Putative quinone-oxidoreductase homolog, chloroplastic gb\|AAL06521.1\|AF412068_1 AT4g13010/F25G13_100 [Arabidopsis thaliana] emb\|CAB45500.1\| putative p	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	quinone-oxidoreductase-like protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%
Blast2go	vacuole	GO:0005773	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%
Blast2go	plastid inner membrane	GO:0009528	Cellular Component	76%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1 complex, gamma subunit	IPR000131	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD48

Fln msg: your sequence is shorter than subject: 62 - 333

Fln protein: VVTLAVTQMIPRGENLALLVDFVSELWLKIVVDSMYPLAKAEGAWAKIMDGHATGKVIVNI*

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGATACCAAGGGGTGAGAACCTTGCACTGTTAGTTGATTTCGTCAGTGAGCTGTGGCTGAAAATCGTTGTTGATTCAATGTACCCTTTGGCAAAGGCAGAAGGTGCATGGGCAAAGATCATGGATGGACATGCTACCGGAAAGGTTATAGTAAACATTTAA___AGAGTAGTCTGTACGTTACTGAAGTGTCATCGCTATTTCTGAGGTTTGACACTCAGTTCAAACTTCATATAGCTGTAGAACTTTGTAAACCTCATTTATAGCTTTAGAAGTCTTAATTATGTAATGCTCTATTCTTTTTTCGAATTTTAACTTCATTTGAAAGATATAGGGATTGGTACTTCCTCGAACCCTGCATATGAGTCTATTATTTTATGGTGTAAAAATGACTATTGCCGTAATGAGAACCAATTTTG

Fln Alignment:

uagpf_mira_rep_c31418___VTLAVTQMIP-----RGENLALLVDFVSELWLKIVVDSMYPLAKAEGAWAKIMDGHATGKVIV
D5AD48________________LTLSSQQIVPFIVSGNSNDLAFMVNLVNEGKVKTIIDSKYPLEKAADAWAKSMDGHATGKIVV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
126		25	75		0.996481
127	75		25		0.996481
128	75			25	0.996481
129		25	75		0.996481
135	75	25			0.996481
137			66	33	0.997452
141	66			33	0.997452
142	66		33		0.997452
143	66			33	0.997452
144		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain