SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37202

Length: 448 nt

UniGene Fasta

>uagpf_v2_unigene37202
CGTCGTGACCTTGGCTGTCACTCAGGAAGACGTCGTGACCTTGGCTGTCACTCATTCATTATAGAAGGATTGATGGAACAACTAGCTTAGATGATAGAGAATCGGCTATTCATGATTTTAATAAGCCTGGTTCTGAATGTTTCCTATTCTTACTTAGTATCCGTGCAGCAGGAAGGGGTTTGAATCTTCAATCAGCAGACACAGTGGTCATATATGATCCTGACCCAAACCCAAAAAATGAAGAGCAGGCTGTAGCTAGGGCTCATAGAATTGGTCAGAAGAGAGAGGTCAGAGTTATATACTTAGAAGCTGTTGTAGAAACAATATCAAGCTACCAGAAAGAAGATGAACTCAGAACTGGGGGAACAATAGATGATGAGGATGATCTTGCTGGTAAAGATCGATATATGGGTTCTGTGGAGAGCCTTGTTCGTAACAACATTCAACA

Ace file of the UniGene uagpf_v2_unigene37202

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8756	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	atp-dependent helicase brm-like	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	59%
Blast2go	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	59%
Blast2go	DNA binding	GO:0003677	Molecular Function	59%
Blast2go	catalytic activity	GO:0003824	Molecular Function	59%
Blast2go	cytosol	GO:0005829	Cellular Component	59%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	59%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Agenet	IPR008395	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3		IPR012287	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 80 aas, your sequence is shorter than subject: 148 - 377

Fln protein: S*PWLSLRKTS*PWLSLIHYRRIDGTTSLDDRESAIHDFNKPGSECFLFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYLEAVVETISSYQKEDELRTGGTIDDEDDLAGKDRYMGSVESLVRNNIQ

Protein Length: 149

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAGACGTCGTGACCTTGGCTGTCACTCATTCATTATAGAAGGATTGATGGAACAACTAGCTTAGATGATAGAGAATCGGCTATTCATGATTTTAATAAGCCTGGTTCTGAATGTTTCCTATTCTTACTTAGTATCCGTGCAGCAGGAAGGGGTTTGAATCTTCAATCAGCAGACACAGTGGTCATATATGATCCTGACCCAAACCCAAAAAATGAAGAGCAGGCTGTAGCTAGGGCTCATAGAATTGGTCAGAAGAGAGAGGTCAGAGTTATATACTTAGAAGCTGTTGTAGAAACAATATCAAGCTACCAGAAAGAAGATGAACTCAGAACTGGGGGAACAATAGATGATGAGGATGATCTTGCTGGTAAAGATCGATATATGGGTTCTGTGGAGAGCCTTGTTCGTAACAACATTCAACA

Fln Alignment:

uagpf_mira_rep_c30779___RIDGTTSLDDRESAIHDFNKPGSECFLFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYL
D5AD70________________RIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
31		50		50	1.0
32			50	50	1.0
33	50			50	1.0
35		50	50		1.0
40	50	50			1.0
41	50			50	1.0
50	33	66			1.0
51		33	66		1.0
58	83		16		0.994516
60		16		83	0.994516
61	83		16		0.994516
67		16	83		0.994516
68		20	80		0.995493
69	80			20	0.995493
71			20	80	0.995493
73	80	20			0.995493
76			80	20	0.995493
77	80	20			0.995493
81	80			20	0.995493
83	20			80	0.995493
225		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain