SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37039

Length: 580 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene37039

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15505	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Hydroxysteroid dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9R8T2_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	short-chain dehydrogenase reductase family 42e member 1-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	78%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
89		50	50		1.0
91	50			50	1.0
92	50		50		1.0
94		50		50	1.0
97		50		50	1.0
99	50		50		1.0
100		50		50	1.0
101	50			50	1.0
103			50	50	1.0
104	50	50			1.0
107	50	50			1.0
109		50	50		1.0
110	50	50			1.0
260		75		25	0.996473
262		75	25		0.996473
267		20		80	0.9955
274	75			25	0.996473
276			75	25	0.996473
277	60	20			0.99255
280		25	75		0.996473
281			75	25	0.996473
283	25		75		0.996473
409	75			25	0.99649
411		33		66	0.997452
422	25		25		0.995533
424	75	25			0.996486
425	75			25	0.99649
426	25		25	50	0.995563
427	50		25	25	0.995542
428	33	33		33	0.997753
429	66	33			0.997452
431	75	25			0.996486
434	25		75		0.996475
435	75		25		0.996475
475			33	66	0.997459
476	33	66			0.997476
477	33		66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain