SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36977

Length: 376 nt

UniGene Fasta

>uagpf_v2_unigene36977
CGTCGTGACCTTGGCTGTCACTCATGGACAGATAATTTTGCAGCAATTTGCTGAATATCCCGATGATTTGATTAGAAGAAGTGCGTCGTGTACCTTGGCTGTCTGACTCAATGGAGCAAAGACAACATACCAAATTGATGCTAACAAAGAAGAAGGCGATAATCAAAGCGAGAAATTTGAATCCGAGGGCATCTCTTAAACTTGAAGCCCGGTCAAGACAAATGCGTGCAACCACTACAAAGCTTATATATCGCATATGGAAAGAGTATTATTCAAGTTCTGACCTGGGATCCAATGATTGTGAGGAGAATGATGTGAAAGAGGTTGCAGAACAGGAAGATCAAGAACAGAGCGACAATGAAGAAGATCCTATTTT

Ace file of the UniGene uagpf_v2_unigene36977

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35504	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytosine-specific methyltransferase n=6 Tax=Nicotiana RepID=A0A9R7_TOBAC	-	-	1.00053e-42	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	DNA (cytosine-5)-methyltransferase	-	-	3.37713e-43	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	maintenance of DNA methylation	GO:0010216	Biological Process	3.37713e-43	63%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	3.37713e-43	63%
Blast2go	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	3.37713e-43	63%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	3.37713e-43	63%
Blast2go	zygote asymmetric cytokinesis in embryo sac	GO:0010069	Biological Process	3.37713e-43	63%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	3.37713e-43	63%

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	DNA (cytosine-5)-methyltransferase 1, eukaryote	IPR017198	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P115

Fln msg: STOP codon was not found. Distance to subject end: 13 aas,

Fln protein: MEQRQHTKLMLTKKKAIIKARNLNPRASLKLEARSRQMRATTTKLIYRIWKEYYSSSDLGSNDCEENDVKEVAEQEDQEQSDNEEDPI

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGACAGATAATTTTGCAGCAATTTGCTGAATATCCCGATGATTTGATTAGAAGAAGTGCGTCGTGTACCTTGGCTGTCTGACTCA_-_ATGGAGCAAAGACAACATACCAAATTGATGCTAACAAAGAAGAAGGCGATAATCAAAGCGAGAAATTTGAATCCGAGGGCATCTCTTAAACTTGAAGCCCGGTCAAGACAAATGCGTGCAACCACTACAAAGCTTATATATCGCATATGGAAAGAGTATTATTCAAGTTCTGACCTGGGATCCAATGATTGTGAGGAGAATGATGTGAAAGAGGTTGCAGAACAGGAAGATCAAGAACAGAGCGACAATGAAGAAGATCCTATTTT

Fln Alignment:

uagpf_mira_rep_c30088___MEQRQHTKLMLTKKKAIIKARNLNPRASLKLEA-RSRQMRATTTKLIYRIWKEYYSSSDLGSNDCEENDVKEV
A9P115________________MEQRQHTKLLLTKKKVIIKERNLNPRASLKFESSRLKQMRATTTKLIYRIWKEYYSSSDLGSNDCEENDVKEI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
85	40		60		1.0
88			60	40	1.0
93	40	60			1.0
96			50	50	1.0
98		50	50		1.0
101		50	50		1.0
108	50			50	1.0
109	50	50			1.0
110	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
85	40		60		1.0
88			60	40	1.0
93	40	60			1.0
96			50	50	1.0
98		50	50		1.0
101		50	50		1.0
108	50			50	1.0
109	50	50			1.0
110	50		50		1.0

Position	A %	C %	G %	T %	Probability
85	40		60		1.0
88			60	40	1.0
93	40	60			1.0
96			50	50	1.0
98		50	50		1.0
101		50	50		1.0
108	50			50	1.0
109	50	50			1.0
110	50		50		1.0

Position	A %	C %	G %	T %	Probability
85	40		60		1.0
88			60	40	1.0
93	40	60			1.0
96			50	50	1.0
98		50	50		1.0
101		50	50		1.0
108	50			50	1.0
109	50	50			1.0
110	50		50		1.0