SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36855

Length: 424 nt

UniGene Fasta

>uagpf_v2_unigene36855
CGTCGTGACCTTGGCTGTCACTCATTGTTTATGTGGGTTGTCTTAGTGTTGAAATTGATCCCAAAGAGTCAGGACTGTGGCTGGCACGCCACTCTTCTTGGGAGCTTCAATTGTGTCCCTGCTTTTTGTCACAGTGATCTCAGGAGGCGGTACTATCATGGCTTCTGCAAGCAGCAGTTATGGCCACTGTTCCATTACATGCTCCCCTTGACACCTGATCACGGTGGCAGATTTGACCGGTCGCTCTGGCAGGCATATCTTTCCGTTAATAAAATCTTTGCTGATAGGGTCATGGAGGTCATTAGCCCTGATGAGGATTCTGTGTGGATCCATGATTACCATCTCATGCTTCTTCCGACATTTCTGCGAAAGAGGTTCAACAAGATGAAGATAGGCTTCTTCCTTCACAGCCCATTTCCCTCGC

Ace file of the UniGene uagpf_v2_unigene36855

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30317	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Trehalose-phosphate synthase 5 n=3 Tax=Physcomitrella patens subsp. patens RepID=A6MIZ2_PHYPA	-	-	82%
FL-Next	Isoform 2 of Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 OS=Arabidopsis thaliana GN=TPS6	-	-	74%
Blast2go	trehalose phosphate synthase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha,alpha-trehalose-phosphate synthase (UDP-forming).	EC:2.4.1.15	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	90%
Blast2go	Trehalose-phosphatase.	EC:3.1.3.12	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	trehalose biosynthetic process	GO:0005992	Biological Process	90%
Blast2go	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	GO:0003825	Molecular Function	90%
Blast2go	trehalose-phosphatase activity	GO:0004805	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Sma3	Cof protein	IPR000150	-	-
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Alpha,alpha-trehalose-phosphate synthase	IPR012766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94AH8-2

Fln msg: Distance to subject end: 457 aas, your sequence is shorter than subject: 141 - 700

Fln protein: RRDLGCHSLFMWVVLVLKLIPKSQDCGWHATLLGSFNCVPAFCHSDLRRRYYHGFCKQQLWPLFHYMLPLTPDHGGRFDRSLWQAYLSVNKIFADRVMEVISPDEDSVWIHDYHLMLLPTFLRKRFNKMKIGFFLHSPFPS

Protein Length: 142

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTTATGTGGGTTGTCTTAGTGTTGAAATTGATCCCAAAGAGTCAGGACTGTGGCTGGCACGCCACTCTTCTTGGGAGCTTCAATTGTGTCCCTGCTTTTTGTCACAGTGATCTCAGGAGGCGGTACTATCATGGCTTCTGCAAGCAGCAGTTATGGCCACTGTTCCATTACATGCTCCCCTTGACACCTGATCACGGTGGCAGATTTGACCGGTCGCTCTGGCAGGCATATCTTTCCGTTAATAAAATCTTTGCTGATAGGGTCATGGAGGTCATTAGCCCTGATGAGGATTCTGTGTGGATCCATGATTACCATCTCATGCTTCTTCCGACATTTCTGCGAAAGAGGTTCAACAAGATGAAGATAGGCTTCTTCCTTCACAGCCCATTTCCCTCGC

Fln Alignment:

uagpf_mira_rep_c29637___IPKSQDCGWHATLLGSFNCVPAFCHSDLRRRYYHGFCKQQLWPLFHYMLPLTPDHGGRFDRSLWQAYLSVNKIFADRVMEVISPDEDSVWIHDYHLMLLPTFLRKRFNKMKIGFFLHSPFPS
Q94AH8-2______________IPLNEQEEVYQILLESFKCVPTFLPLDLYTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFDRTLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
68	60	40			1.0
72	60		40		1.0
73			60	40	1.0
77		40		60	1.0
78			60	40	1.0
85			50	50	1.0
89			50	50	1.0
91	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
68	60	40			1.0
72	60		40		1.0
73			60	40	1.0
77		40		60	1.0
78			60	40	1.0
85			50	50	1.0
89			50	50	1.0
91	50	50			1.0

Position	A %	C %	G %	T %	Probability
68	60	40			1.0
72	60		40		1.0
73			60	40	1.0
77		40		60	1.0
78			60	40	1.0
85			50	50	1.0
89			50	50	1.0
91	50	50			1.0

Position	A %	C %	G %	T %	Probability
68	60	40			1.0
72	60		40		1.0
73			60	40	1.0
77		40		60	1.0
78			60	40	1.0
85			50	50	1.0
89			50	50	1.0
91	50	50			1.0