SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36792

Length: 616 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene36792

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2116	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport protein SEC23 [Arabidopsis thaliana] dbj\|BAB02785.1\| protein transport protein Sec23 [Arabidopsis thaliana] gb\|AAO22730.1\| putative transport protein [Arabidopsis thaliana] gb\|AAO50656.1\| putative transport protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Volvox carteri (Green alga).	-	-	55%
Blast2go	protein transport protein sec23	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	83%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	transporter activity	GO:0005215	Molecular Function	83%
Blast2go	COPII vesicle coat	GO:0030127	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
112	66		33		1.0
113			66	33	1.0
120		33		66	1.0
122			60	40	1.0
124		60	40		1.0
125			40	60	1.0
128			66	33	1.0
130			16	83	0.994514
133		40	60		1.0
134		60		40	1.0
135		40	60		1.0
136	40		60		1.0
158		40		60	1.0
204		40		60	1.0
208	50		50		1.0
219			12	87	0.992556
222			12	87	0.992556
226	14	85			0.993533
229		87		12	0.99256
232	85		14		0.993533
233		14		85	0.993533
234		85		14	0.993533
236	85			14	0.993533
237		14		85	0.993533
238	14			85	0.993533
240			85	14	0.993533
259	12		87		0.992556

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain