SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36537

Length: 546 nt

UniGene Fasta

>uagpf_v2_unigene36537
CGTCGTGACCTTGGCTGTCACTCAAACTTTTGATGTTGTTGGCCCTGTCTGCGAGTCTGCGGACTTTTTAGGAAAGGATAGGGAACTGCCAACTCCAGTGAAGGGAGCAGGATTAGTAATTCATGATGCAGGAGCGTACTGTATGAGTATGGCATCATGTTACAACTTGACGTCGTGACCGGCTGACTCCTGGGTAGAAGATGATGGATCAGTTAAAAAGATAAGACAAGCTGAAATATTTGAAGATCATCTCCGTTACTTCAAAGGGCTATGACTAAAGGCTGCTGGTAATGATCCTATATCTTTGTTTGAGAGAGATGTTCAATATGGATGGACGGTACCTCTCGTTAAGATCAAATTCAAATTGTCTTACTGTTTTTAACACGTATGAAGATCGAGCTTCTTAATGCACGAGAGTGAACCTGACTATCAGTTGCATGCTTACAAAAGGTGCAGTCGGTAGAGGGCATGGAAATTGAATTTTAGACGAGTTAAACTTAAATCAGTAAGTTTGGCATAACATAATGTGGTCAAGACTCAAGATGC

Ace file of the UniGene uagpf_v2_unigene36537

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5128	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Diaminopimelate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RH82_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	diaminopimelate decarboxylase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.1.1.2-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	lysine biosynthetic process via diaminopimelate	GO:0009089	Biological Process	82%
Blast2go	diaminopimelate decarboxylase activity	GO:0008836	Molecular Function	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	0.0	-
Sma3	Diaminopimelate decarboxylase, LysA	IPR002986	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQH1

Fln msg: your sequence is shorter than subject: 91 - 488

Fln protein: VVTLAVTQTFDVVGPVCESADFLGKDRELPTPVKGAGLVIHDAGAYCMSMASCYNLTS*PADSWVEDDGSVKKIRQAEIFEDHLRYFKGL*

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTTTTGATGTTGTTGGCCCTGTCTGCGAGTCTGCGGACTTTTTAGGAAAGGATAGGGAACTGCCAACTCCAGTGAAGGGAGCAGGATTAGTAATTCATGATGCAGGAGCGTACTGTATGAGTATGGCATCATGTTACAACTTGACGTCGTGACCGGCTGACTCCTGGGTAGAAGATGATGGATCAGTTAAAAAGATAAGACAAGCTGAAATATTTGAAGATCATCTCCGTTACTTCAAAGGGCTATGA___CTAAAGGCTGCTGGTAATGATCCTATATCTTTGTTTGAGAGAGATGTTCAATATGGATGGACGGTACCTCTCGTTAAGATCAAATTCAAATTGTCTTACTGTTTTTAACACGTATGAAGATCGAGCTTCTTAATGCACGAGAGTGAACCTGACTATCAGTTGCATGCTTACAAAAGGTGCAGTCGGTAGAGGGCATGGAAATTGAATTTTAGACGAGTTAAACTTAAATCAGTAAGTTTGGCATAACATAATGTGGTCAAGACTCAAGATGC

Fln Alignment:

uagpf_mira_rep_c28160___AVTQTFDVVGPVCESADFLGKDRELPTPVKGAGLVIHDAGAYCMSMASCYNLTS*PADSWVEDDGSVKKIRQAEIFEDHLRYFKGL
C0PQH1________________AKIQTFDVVGPVCESADFLGKDRELPTPAMWAGMVVHDAGAYCMSMASTYNLRMRPAEYWIQDDGSVKKIRHAETIEDHLRYFEGL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
243		33		66	0.997459
244			33	66	0.997459
246		33	66		0.997457
247	66		33		0.997457
248	66			33	0.997457
251		33		66	0.997457
253	66			33	0.997457
321		25	75		0.996477
322	75		25		0.996477
324		25	75		0.996476
325			25	75	0.996477
327		75	25		0.996477
329	75	25			0.996477
330		25		75	0.996477
331	75			25	0.996477
335	66	33			0.997452
339		33	66		0.997452
342			66	33	0.997452
343		33	66		0.997452
344	25			75	0.996481

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain