SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36426

Length: 576 nt

UniGene Fasta

>uagpf_v2_unigene36426
CGTCGTGACCTTGGCTGTCACTCAATTTTGTATGGTATGGACTCATCTTCTCTGCGTCGTGACCTTGAGCTGTCACTACATATATGATCTTTTTATTGTTGGAGGGGCCTTCTATGGAGCGGTTACATTCTTAGGGCTTAGCAACTGTTCAACTGTACAGCCTGTGGTTGCAGTAGAGAGAACTGTGTTCTACAGAGAAAGGGCTGCAGGACTATACTCTGCTTTGCCATATGCTCTGGCTCAGGTAGTGATTGAGCTTCCGTACATATTCGTCCAGACAGTTATGTACACTCTTATCGTTTACAGTATGATCCATTTTGAGTGGACAACTACTAAGTTTGGCTGGTTCTTCTTGCTGAACTACTTCACATTTCTGTACTTCACCTATTATGGGATGATGACGGTCTCCATTACTTCAAACCAACAAGTTGCCTCAATAGTAGCTTCAGCTTTCTACTGCCTTTTCAATCTGTTTTCAGGGTTCTTCATTCCTAAACCGGTATGTAACCTACTTTGTCCTGTTTCTTTATACTAAACTTTATGGACCCATATAAGTAGGCCAGAATAGAATGTAAG

Ace file of the UniGene uagpf_v2_unigene36426

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18715	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter n=1 Tax=Selaginella moellendorffii RepID=D8T797_SELML	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	atp-binding cassette transporter	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	86%
Blast2go	Thiamine metabolism	00730	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to indolebutyric acid stimulus	GO:0071366	Biological Process	86%
Blast2go	negative regulation of defense response	GO:0031348	Biological Process	86%
Blast2go	cadmium ion transmembrane transport	GO:0070574	Biological Process	86%
Blast2go	indole glucosinolate catabolic process	GO:0042344	Biological Process	86%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	86%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	86%
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	86%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	86%
Blast2go	systemic acquired resistance	GO:0009627	Biological Process	86%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	86%
Blast2go	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	86%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 64 aas, your sequence is shorter than subject: 178 - 412

Fln protein: VVTLAVTQFCMVWTHLLCVVTLSCHYIYDLFIVGGAFYGAVTFLGLSNCSTVQPVVAVERTVFYRERAAGLYSALPYALAQVVIELPYIFVQTVMYTLIVYSMIHFEWTTTKFGWFFLLNYFTFLYFTYYGMMTVSITSNQQVASIVASAFYCLFNLFSGFFIPKPVCNLLCPVSLY*

Protein Length: 179

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGTATGGTATGGACTCATCTTCTCTGCGTCGTGACCTTGAGCTGTCACTACATATATGATCTTTTTATTGTTGGAGGGGCCTTCTATGGAGCGGTTACATTCTTAGGGCTTAGCAACTGTTCAACTGTACAGCCTGTGGTTGCAGTAGAGAGAACTGTGTTCTACAGAGAAAGGGCTGCAGGACTATACTCTGCTTTGCCATATGCTCTGGCTCAGGTAGTGATTGAGCTTCCGTACATATTCGTCCAGACAGTTATGTACACTCTTATCGTTTACAGTATGATCCATTTTGAGTGGACAACTACTAAGTTTGGCTGGTTCTTCTTGCTGAACTACTTCACATTTCTGTACTTCACCTATTATGGGATGATGACGGTCTCCATTACTTCAAACCAACAAGTTGCCTCAATAGTAGCTTCAGCTTTCTACTGCCTTTTCAATCTGTTTTCAGGGTTCTTCATTCCTAAACCGGTATGTAACCTACTTTGTCCTGTTTCTTTATACTAAACTTTATGGACCCATATAAGTAGGCCAGAATAGAATGTAAG

Fln Alignment:

uagpf_mira_rep_c27387___DLFIVGGAFYGAVTFLGLSNCSTVQPVVAVERTVFYRERAAGLYSALPYALAQVVIELPYIFVQTVMYTLIVYSMIHFEWTTTKFGWXXXXXXXXXXXXXXXGMMTVSITSNQQVASIVASAFYCLFNLFSGFFIPKP
D5ACV1________________DLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQTAIEIPYILIQTTIYSLIVYSMIDFQWTTVKFFWFLFYMFMCFVYFTLYGMMAVALTPGHQIAAIVSSFFYGFWNIFSGFLITRP

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
58	50	50			1.0
59		50	50		1.0
61	50		50		1.0
63		50	50		1.0
64	50	50			1.0
65	50			50	1.0
66	33			66	1.0
74		33	66		1.0
138			20	80	0.995498
140	80	20			0.995498
142		80		20	0.995498
143	80		20		0.995498
147		20	80		0.995498
151	75		25		0.996473
152	75		25		0.996473
161			75	25	0.996473
163	25	75			0.996473
164		14		85	0.993536
167		14	85		0.993536
170			14	85	0.993536
171	14		85		0.993536
173	85	14			0.993536
174			85	14	0.993536
176	83		16		0.994512
178	83	16			0.994512
179			83	16	0.994512
180	83		16		0.994512
181			83	16	0.994512
182	83	16			0.994512
187	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain