SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36424

Length: 543 nt

UniGene Fasta

>uagpf_v2_unigene36424
CGTCGTGACCTTGGCTGTCACTCATTTTGGTTATGACATCAAAAGCCAAAGAAATATTTGGATGAAATTGCCCACGATCTCTGTCCTGATTTTAAGCATACAACAATTGTATAGAATCAGTACCATGTATTGGGACGATAAATATGGCACACACAGTGTGTCTCCAGATGTTATTGCAAGCATGAAAATGTTGATGGCAGAAGATTCAAACGATGCTCATGGAAATTCGTTCTTGTTGGATGACGACTTGAGTATACCATTCTCTGTGGATGACATCTCAAAGTCTATGCAAGAAACAGATTTGTCAGATATCAATCCACCGTCTCAGCTTCTTGAGAATTCAGTCTTTTCATTTCTTGTTGCCATGTACTCTGTAATACAGAAGGCTACATTTTCTATTATTTTCATCTCTCAATCAATGGCGTTATCAGCTCATGTGCAGCTATTCCCTTGCAACATACAATTGGATTTTTATCCAGATCTTGTCTCAGAGCAGTAGAGTACATGACTGAGGAGAATAGTTGCACCCACTCCGCCTCCCCT

Ace file of the UniGene uagpf_v2_unigene36424

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27342	15/16

Source	Descriptions	Term	Type	Identity
AutoFact	Myosin class 11-1 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX1_ADICA	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	76%
Blast2go	protein	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Involucrin repeat	IPR000354	-	-
Sma3	DNA topoisomerase, type IA	IPR000380	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA topoisomerase, type IA, domain 2	IPR003601	-	-
Sma3	HAMP linker domain	IPR003660	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3		IPR006154	-	-
Sma3	Toprim domain	IPR006171	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA topoisomerase, type IA, central	IPR013497	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 3	IPR013826	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A5ARX4

Fln msg: Separated hits, possible frame ERROR between 87 and 89, your sequence is shorter than subject: 167 - 1594

Fln protein: RRDLGCHSFWL*HQKPKKYLDEIAHDLCxxILSIQQLYRISTMYWDDKYGTHSVSPDVIASMKMLMAEDSNDAHGNSFLLDDDLSIPFSVDDISKSMQETDLSDINPPSQLLENSVFSFLVAMYSVIQKATFSIIFISQSMALSAHVQLFPCNIQLDFYPDLVSEQ*

Protein Length: 168

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGGTTATGACATCAAAAGCCAAAGAAATATTTGGATGAAATTGCCCACGATCTCTGTCCxxxGATTTTAAGCATACAACAATTGTATAGAATCAGTACCATGTATTGGGACGATAAATATGGCACACACAGTGTGTCTCCAGATGTTATTGCAAGCATGAAAATGTTGATGGCAGAAGATTCAAACGATGCTCATGGAAATTCGTTCTTGTTGGATGACGACTTGAGTATACCATTCTCTGTGGATGACATCTCAAAGTCTATGCAAGAAACAGATTTGTCAGATATCAATCCACCGTCTCAGCTTCTTGAGAATTCAGTCTTTTCATTTCTTGTTGCCATGTACTCTGTAATACAGAAGGCTACATTTTCTATTATTTTCATCTCTCAATCAATGGCGTTATCAGCTCATGTGCAGCTATTCCCTTGCAACATACAATTGGATTTTTATCCAGATCTTGTCTCAGAGCAGTAGAGTACATGACTGAGGAGAATAGTTGCACCCACTCCGCCTCCCCT

Fln Alignment:

uagpf_mira_rep_c27376___FWL*HQKPKKYLDEIAHDLCPxILSIQQLYRISTMYWDDKYGTHSVSPDVIASMKMLMAEDSNDAHGNSFLLDDDLSIPFSVDDISKSMQETDLSDINPPSQLLENSVFSFLV
A5ARX4________________FLVIHQKPKKTLDEISHDLCPxVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDISDIEPPPLIRENSGFSFLL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
82		25		75	1.0
87		75	25		1.0
88			8	50	1.0
89		27	72		1.0
90	45		45		1.0
91		25		75	1.0
92		25		75	1.0
94	18			81	0.999994
96	72		27		1.0
99	72			27	1.0
100			27	72	1.0
101	72			27	1.0
105	72			27	1.0
172			14	85	0.999981
349		10		50	1.0
350		90		10	0.903076
351	16			83	0.994523
352		16		83	0.994523
354		16		83	0.994523
355	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain