SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36390

Length: 210 nt

UniGene Fasta

>uagpf_v2_unigene36390
CGTCGTGACCTTGGCTGTCACTCAATTCAGAAAGGTTTGATGAAGGAGCAAGTGAAAAAACGATCAGCTTCAAAAATGCTGGCAGGCTCCTTCCATGGTAGTGGACAGGCCGAAACCTGAACATTATTTTGGAACAGAACTTCAACTTTAAGGAGGACCATTTACAATGTTATTTATTTACATGCAAGGCACATTTCGTCAGTTTCTTCA

Ace file of the UniGene uagpf_v2_unigene36390

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23775	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	cholinephosphate cytidylyltransferase [Pisum sativum]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	choline-phosphate cytidylyltransferase b-like	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQQ2

Fln msg: your sequence is shorter than subject: 40 - 337

Fln protein: RRDLGCHSIQKGLMKEQVKKRSASKMLAGSFHGSGQAET*

Protein Length: 41

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCAGAAAGGTTTGATGAAGGAGCAAGTGAAAAAACGATCAGCTTCAAAAATGCTGGCAGGCTCCTTCCATGGTAGTGGACAGGCCGAAACCTGA___ACATTATTTTGGAACAGAACTTCAACTTTAAGGAGGACCATTTACAATGTTATTTATTTACATGCAAGGCACATTTCGTCAGTTTCTTCA

Fln Alignment:

uagpf_mira_rep_c27090___IQKGLMKEQVKKRSASKMLAGS
B8LQQ2________________IQKGLMKEQVKKRSASKMLAGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain