SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36290

Length: 495 nt

UniGene Fasta

>uagpf_v2_unigene36290
CGTCGTGACCTTGGCTGTCACTCAACAGGACTTGGCTTTGCTTCAGATAAGCAAGGCATCAAATGTTGTTCCTTTGTTGATGAGTGGAGCAGGACATGATGCAATGGCAATGTCACATCTGACGAAGGTTGGGATGTTGTTTGTCCGATGTACTGGGGGAATAAGCCATTCTCCCGCAGAGCATGTTCTAGAAGATGACATTTGGGCAGCAAGCCGATCACTTCTAGCTTTTCTTCAAGAATTATAGATCTGTAGAACTTCTAGCTTTTCTACAAGAATTTTACATCTGTATCATATCCACTGAAACATGTTGCTATTTGTTCAGAGAGTAGATATATTTAGCTATTTTCCAAGAATCGTTAGATCTGTACCATATCTATAAAATAATGTGACATTCTGGTCAAGATATTATTTATGTTGTTTACAGTAAGGGGAAGGCACAGGCACTTGTTCTACATTATTTAAATTAAATTCAGGGTTAGAACAATTTCAATG

Ace file of the UniGene uagpf_v2_unigene36290

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3837	13/14

Source	Descriptions	Term	Type	Identity
AutoFact	allantoate deiminase [Arabidopsis thaliana] sp\|O49434.2\|AAH_ARATH RecName: Full=Allantoate deiminase, chloroplastic; AltName: Full=Allantoate amidohydrolase; Short=AtAAH; Flags: Precursor emb\|CAA16615.2\| hyuC-like protein [Arabidopsis thaliana] emb\|CAB790	-	-	63%
FL-Next	sp=Allantoate deiminase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	allantoate amidohydrolase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Allantoate deiminase.	EC:3.5.3.9	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	ureide catabolic process	GO:0010136	Biological Process	76%
Blast2go	proteolysis	GO:0006508	Biological Process	76%
Blast2go	allantoate deiminase activity	GO:0047652	Molecular Function	76%
Blast2go	metallopeptidase activity	GO:0008237	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	Amidase, hydantoinase/carbamoylase	IPR010158	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O49434

Fln msg: your sequence is shorter than subject: 82 - 525

Fln protein: VVTLAVTQQDLALLQISKASNVVPLLMSGAGHDAMAMSHLTKVGMLFVRCTGGISHSPAEHVLEDDIWAASRSLLAFLQEL*

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAGGACTTGGCTTTGCTTCAGATAAGCAAGGCATCAAATGTTGTTCCTTTGTTGATGAGTGGAGCAGGACATGATGCAATGGCAATGTCACATCTGACGAAGGTTGGGATGTTGTTTGTCCGATGTACTGGGGGAATAAGCCATTCTCCCGCAGAGCATGTTCTAGAAGATGACATTTGGGCAGCAAGCCGATCACTTCTAGCTTTTCTTCAAGAATTATAG___ATCTGTAGAACTTCTAGCTTTTCTACAAGAATTTTACATCTGTATCATATCCACTGAAACATGTTGCTATTTGTTCAGAGAGTAGATATATTTAGCTATTTTCCAAGAATCGTTAGATCTGTACCATATCTATAAAATAATGTGACATTCTGGTCAAGATATTATTTATGTTGTTTACAGTAAGGGGAAGGCACAGGCACTTGTTCTACATTATTTAAATTAAATTCAGGGTTAGAACAATTTCAATG

Fln Alignment:

uagpf_mira_rep_c26290___VPLLMSGAGHDAMAMSHLTKVGMLFVRCTGGISHSPAEHVLEDDIWAASRSLLAFLQ
O49434________________VPVLMSGAGHDAMAMAHLTKVGMLFVRCRGGISHSPAEHVLDDDVGAAGLAILEFLE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
87		14	85		0.993534
89			83	16	0.994512
94	83			16	0.994512
97		16	83		0.994512
100	85	14			0.993539
101	16			83	0.994512
121	87		12		0.992558
128		12	87		0.992558
129	87			12	0.992558
130	87			12	0.992559
133		14		85	0.993533
136			87	12	0.99256
137		12	87		0.99256
140		12	87		0.992554
141	12			87	0.992554
343		22		77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain