SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene36008

Length: 507 nt

UniGene Fasta

>uagpf_v2_unigene36008
CGTCGTGACCTTGGCTGTCACTCAGCTTTATGCTACTTATCTGGGGAAGGCATTACACGCAATTATCAAGAGGCAAGGAAATGGATGAAACGTGCAGCACTTGCTGGGCATACAAAAGCACAATTTGAGCATGGCCTGAAGTTATTTGCTGAGGGTGACGGTGGTCATGCCTTGGTATTTCTTGAATTGGCTACACGAGCTGGTGAAGCAGCAGCCACACACATCCGAGATGTCCTCCTTCAGCAGCTTTCTCCAAGGTTGAAAGCACATGCAATCACATGTGCGGATAACTGGCAAATAAGGCAGGCTTCACGTTGATGTAGAGTGGGCTGTTATTTTCCTATATTGAGGATTTATTGCATCTCTTGCCTGGGGACAAAGAATTTATAACATGCCATACAGAGGCATTCAATAACAGAAAAGACATATACCAAGAGCGATGGTTTCCAACTATATCCATCTATGATTTGATCAGAAACTGTATATTTGTGGAAAGTTGTTTGTATT

Ace file of the UniGene uagpf_v2_unigene36008

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3884	7/9

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q94C27.1\|FB84_ARATH RecName: Full=F-box protein At1g70590 gb\|AAK59789.1\| At1g70590/F5A18_23 [Arabidopsis thaliana] gb\|AAO11593.1\| At1g70590/F5A18_23 [Arabidopsis thaliana] gb\|AEE35086.1\| F-box protein [Arabidopsis t	-	-	50%
FL-Next	sp=F-box protein At1g70590; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	f-box protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%
Blast2go	plastid	GO:0009536	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Sel1-like	IPR006597	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q94C27

Fln msg: your sequence is shorter than subject: 106 - 351

Fln protein: RRDLGCHSALCYLSGEGITRNYQEARKWMKRAALAGHTKAQFEHGLKLFAEGDGGHALVFLELATRAGEAAATHIRDVLLQQLSPRLKAHAITCADNWQIRQASR*

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTATGCTACTTATCTGGGGAAGGCATTACACGCAATTATCAAGAGGCAAGGAAATGGATGAAACGTGCAGCACTTGCTGGGCATACAAAAGCACAATTTGAGCATGGCCTGAAGTTATTTGCTGAGGGTGACGGTGGTCATGCCTTGGTATTTCTTGAATTGGCTACACGAGCTGGTGAAGCAGCAGCCACACACATCCGAGATGTCCTCCTTCAGCAGCTTTCTCCAAGGTTGAAAGCACATGCAATCACATGTGCGGATAACTGGCAAATAAGGCAGGCTTCACGTTGA___TGTAGAGTGGGCTGTTATTTTCCTATATTGAGGATTTATTGCATCTCTTGCCTGGGGACAAAGAATTTATAACATGCCATACAGAGGCATTCAATAACAGAAAAGACATATACCAAGAGCGATGGTTTCCAACTATATCCATCTATGATTTGATCAGAAACTGTATATTTGTGGAAAGTTGTTTGTATT

Fln Alignment:

uagpf_mira_c23788___ALCYLSGEGITRNYQEARKWMKRAALAGHTKAQFEHGLKLFAEGDGGHALVFLELATRAGEAAATHIRDVLLQQLSPRLKA----HAITCADNWQ
Q94C27________________SLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSVLYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWR

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
131	85	14			0.993537
135	85		14		0.993537
138	14		85		0.993537
143	83			16	0.994512
144	83		16		0.994512
146		16		83	0.994512
149			16	83	0.994512
151		16		83	0.994512
152	16		83		0.994512
155		16	83		0.994512
156	87	12			0.992555
159		12	87		0.992557
161		11		88	0.92391
163	88			11	0.923776
164		87		12	0.992554
165		11	77		0.968132
166			88	11	0.923776
169	11		88		0.92373
170		25		75	1.0
171		87		12	0.992554
172	75		12	12	0.975346
174		12	87		0.992554
175	12	75	12		0.975346
179	12			87	0.992554
181	12		87		0.992554
182		12	87		0.992554
332		16	83		0.994513

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain