SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35975

Length: 403 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene35975
AAGGAAGGATCATCTAGCATGCCTCTTGAGCTAGTCCATACAGATGTATGTGGTCCATTTAGGAAAAGGACACCTCGAGGAGAAGAATACTTGATACTATTCATTGACGATTTCTCCAGGTTTGTTTCGTTGGGACTTATGAAGCACAAAGACGAAGCATTCGAAAAATTCAAATCCTTCAAGACATTGGTTGAAAATGAATCAGGTTACAAAATTAAGTGCCTCAGGTCCGACAGAGGTGGGGAGTTTACCTAAAATGAATTTTTCGATTTCTATGAAGAACATGGAATAAGAAGGGAATTCTCTACAGCTAGGAATCCTCAGCAAAATGGAGTGGTGGAAAAAATGAACATAACGGTTCAACAAATGGCTCGTGCTATTCTTGATGAGTCTAGAACTCCCG

Ace file of the UniGene uagpf_v2_unigene35975 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41522	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH	-	-	1.0e-32	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	copia-type polyprotein	-	-	5.57319e-38	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR010256	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 134 - 407

Fln protein: KEGSSSMPLELVHTDVCGPFRKRTPRGEEYLILFIDDFSRFVSLGLMKHKDEAFEKFKSFKTLVENESGYKIKCLRSDRGGEFT*NEFFDFYEEHGIRREFSTARNPQQNGVVEKMNITVQQMARAILDESRTP

Protein Length: 135

Fln nts: AAGGAAGGATCATCTAGCATGCCTCTTGAGCTAGTCCATACAGATGTATGTGGTCCATTTAGGAAAAGGACACCTCGAGGAGAAGAATACTTGATACTATTCATTGACGATTTCTCCAGGTTTGTTTCGTTGGGACTTATGAAGCACAAAGACGAAGCATTCGAAAAATTCAAATCCTTCAAGACATTGGTTGAAAATGAATCAGGTTACAAAATTAAGTGCCTCAGGTCCGACAGAGGTGGGGAGTTTACCTAAAATGAATTTTTCGATTTCTATGAAGAACATGGAATAAGAAGGGAATTCTCTACAGCTAGGAATCCTCAGCAAAATGGAGTGGTGGAAAAAATGAACATAACGGTTCAACAAATGGCTCGTGCTATTCTTGATGAGTCTAGAACTCCCG

Fln Alignment:

uagpf_mira_c23722___KEGSSSMPLELVHTDVCGPFRKRTPRGEEYLILFIDDFSRFVSLGLMKHKDEAFEKFKSFKTLVENESGYKIKCLRSDRGGEFT*NEFFDFYEEHGIRREFSTARNPQQNGVVEKMNITVQQMARAIL
B8LKX7________________KSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain