SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35958

Length: 738 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene35958

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22973	10/11
SustainPine v2.0	sp_v2.0_unigene78084	1/11

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Dynamin-related protein 5A; AltName: Full=Soybean dynamin-like protein 5A; Short=SDL5A gb\|AAC49183.1\| SDL5A [Glycine max]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	dynamin-related protein 5a isoform 1	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	93%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-

Full-Lengther Next Prediction

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
158		25		75	0.996476
161		33	66		0.997452
163	75			25	0.996476
164			25	75	0.996476
168		25		75	0.99649
169		33		66	0.997452
174	66	33			0.997452
175	66			33	0.997452
177			66	33	0.997452
178	66	33			0.997452
180	66	33			0.997452
181	60	20		20	0.99255
182		20	80		0.995493
184	20	80			0.995493
185	83		16		0.994516
187	83		16		0.994516
188	16			83	0.994516
190		16	83		0.994516
193			20	80	0.995493
196	80			20	0.995493
199		20		80	0.995493
200	20			80	0.995493
202		80		20	0.995493
203		20		80	0.995493
204	20			80	0.995493
297	71	28			1.0
298	71		28		1.0
301		71	28		1.0
302	71			28	1.0
307	71	28			1.0
309	71			28	1.0
310	71		28		1.0
311	71		28		1.0
316	66		33		1.0
318	66	33			1.0
319	33		66		1.0
321	66			33	1.0
322		83		16	0.994512
332		10	90		0.903229
333	90		10		0.903134
337	90			10	0.903134
340	90	10			0.903134
342	90			10	0.903134
348			11	88	0.923564
349			88	11	0.923564
352	88	11			0.923564
353	88			11	0.923564
354		11	88		0.923564
500	80			20	0.995493
501		20		80	0.995493
615	66			33	0.997456
616			66	33	0.997456
618			33	66	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain